Hg_chrom1_TN10mRNA_1625
Organism: Heterodera glycines Gene Locus: chr1:14924642-14926773 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.686 | 1.536 | 0.943 | 0.732 | 1.179 | 1.149 | 0.674 | 1.297 | 1.153 | 1.434 | 0.786 | 1.942 | 1.441 | 0.499 | 1.251 | 1.415 | 0.619 | 0.858 | 0.907 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1560
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
25-48
|
0.942
|
— | — | — | — |
0.000
|
— | — |
0.681
|
0.180
|
0.015
|
0.598
|
0.161
|
0.207
|
0.182
|
0.048
|
0.126
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006244
|
1.000
|
1.000
|
Hsc_gene_12671.t1
|
Hsc_gene_12671.t1
|
— |
P34371.1 BTB and MATH domain-containing protein 42 [Caenorhabditis elegans]
|
KAI3421988.1 BTB/POZ domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.908|GO:0005575_0.821|GO:0110165_0.777|GO:0005622_0.708|GO:0009987_0.681|GO:0016020_0.626|GO:0043226_0.607|GO:0043229_0.579|GO:0050896_0.538|GO:0043227_0.516|GO:0043231_0.508|GO:0065007_0.503
|
IPR000210+207-314_216-284_216-316+|IPR002083+44-172_46-173_48-154_49-156+|IPR008974+43-175+|IPR011333+198-317_202-313+
|
SM00061+49-156+|SM00225+216-316+
|
PF00651+207-314+BTB/POZ_domain|PF22486+48-154+MATH_domain
|
— |
PTHR24413+176-383+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-424
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
47968.530
|
6.712
|
1.500
|
26.179
|
10.613
|
50.943
|
49.057
|
13.915
|
12.264
|
47.406
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1047.003
|
1254.604
|
1029.747
|
1082.458
|
1168.951
|
1127.105
|
2521.552
|
1371.736
|
604.642
|
543.597
|
569.759
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.513
|
-0.350
|
0.180
|
— | — |
1.174
|
— |
1.024
|
— | — | — | — | — |
No JSON data available for plots.