Hg_chrom1_TN10mRNA_1628
Organism: Heterodera glycines Gene Locus: chr1:14930928-14933988 Feature type: polypeptideProtein Sequence
Length: 573
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.502 | 1.136 | 0.793 | 0.181 | 1.949 | 0.761 | 0.436 | 0.262 | 0.737 | 0.849 | 1.666 | 1.437 | 0.388 | 1.141 | 1.532 | 0.748 | 1.717 | 0.582 | 0.537 | 0.103 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1563
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
AQKVPKKAKPKEEG,KRGEKAVKTAPDREEKK,RKESKDTTAQKVPKKAKPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.324
|
0.104
|
0.013
|
0.736
|
0.067
|
0.075
|
0.170
|
0.006
|
0.249
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006247
|
1.000
|
1.000
|
Hsc_gene_12674.t1
|
Hsc_gene_12674.t1
|
— |
O01479.2 Tropomodulin [Caenorhabditis elegans]
|
KAI1720812.1 tropomodulin [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005523|GO:0051694
|
GO:0005575_0.829|GO:0110165_0.820|GO:0008150_0.745|GO:0005622_0.704|GO:0009987_0.675|GO:0043226_0.651|GO:0043229_0.637|GO:0043228_0.590|GO:0043232_0.582|GO:0005737_0.563|GO:0003674_0.549|GO:0005488_0.542
|
IPR004934+14-254+|IPR032675+86-255+
|
— | — | — |
PTHR10901+14-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-99;247-573
|
1.000
|
100-246
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
63359.510
|
10.024
|
15.500
|
35.079
|
2.967
|
58.639
|
41.361
|
19.023
|
16.056
|
51.832
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
3156.432
|
7465.663
|
5414.430
|
1828.439
|
1044.591
|
2056.662
|
950.378
|
7334.861
|
681.466
|
3512.655
|
2299.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.693
|
-2.167
|
-1.458
|
-0.839
|
0.992
|
-1.102
|
1.732
|
-2.805
|
— | — | — | — | — |
No JSON data available for plots.