Hg_chrom1_TN10mRNA_1629
Organism: Heterodera glycines Gene Locus: chr1:14934292-14936008 Feature type: polypeptideProtein Sequence
Length: 265
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 0.263 | 1.235 | 1.171 | 1.069 | 0.968 | 0.629 | 1.698 | 1.174 | 1.173 | 0.572 | 1.998 | 1.782 | 0.871 | 1.617 | 1.024 | 0.804 | 0.8 | 1.161 | 0.777 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1564
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.768
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.603
|
0.215
|
0.032
|
0.572
|
0.204
|
0.086
|
0.087
|
0.156
|
0.066
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006248
|
1.000
|
1.000
|
Hsc_gene_12675.t1
|
Hsc_gene_12675.t1
|
— |
P34254.1 Nicotinamide N-methyltransferase [Caenorhabditis elegans]
|
KAI1717590.1 NNMT/PNMT/TEMT family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168
|
GO:0003674_0.717|GO:0005575_0.622|GO:0110165_0.617|GO:0003824_0.599|GO:0016740_0.553|GO:0008150_0.527|GO:0008168_0.517|GO:0016741_0.517|GO:0008757_0.516
|
IPR000940+29-229_32-225_34-265+|IPR029063+28-248_37-226+
|
— |
PF01234+32-225+NNMT/PNMT/TEMT_family
|
— |
PTHR10867+29-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30
|
1.000
|
31-265
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
30273.680
|
6.574
|
0.500
|
28.302
|
13.962
|
45.283
|
54.717
|
15.094
|
13.208
|
46.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
midnightblue
|
875.676
|
364.626
|
1037.076
|
483.363
|
620.246
|
604.054
|
293.295
|
1558.216
|
100.466
|
1895.402
|
1126.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.279
|
0.270
|
-0.993
|
0.329
|
— |
-1.032
|
1.268
|
-2.269
|
-4.336
|
— | — | — | — |
No JSON data available for plots.