Hg_chrom1_TN10mRNA_163
Organism: Heterodera glycines Gene Locus: chr1:1167994-1169908 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 0.85 | 0.332 | 0.787 | 0.685 | 0.937 | 0.652 | 0.685 | 1.725 | 1.172 | 0.623 | 1.612 | 2.029 | 1.317 | 1.957 | 1.435 | 0.823 | 0.623 | 0.702 | 0.672 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_158
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
16-46
|
0.976
|
77-97
|
1.000
|
— | — |
0.257
|
— | — |
0.425
|
0.422
|
0.161
|
0.548
|
0.110
|
0.041
|
0.158
|
0.036
|
0.048
|
0.369
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005592
|
1.000
|
1.000
|
Hsc_gene_20353.t1
|
Hsc_gene_20353.t1
|
— |
A0A061I403.1 Protein adenylyltransferase FICD [Cricetulus griseus]
|
WP_245966903.1 Fic family protein [Sphaerisporangium album]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.930|GO:0005575_0.907|GO:0110165_0.907|GO:0016020_0.845|GO:0003674_0.818|GO:0050896_0.788|GO:0071944_0.715|GO:0006950_0.714|GO:0003824_0.687|GO:0005886_0.686|GO:0016740_0.670|GO:0005622_0.662|GO:0016772_0.655|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.641|GO:0043226_0.634|GO:0043229_0.623|GO:0005737_0.605|GO:0043227_0.587|GO:0043231_0.586|GO:0005488_0.536|GO:0008152_0.532|GO:0051716_0.528|GO:0044238_0.519|GO:0043170_0.509
|
IPR003812+35-197_135-156+|IPR036597+128-203_134-192+
|
— |
PF02661+135-156+Fic/DOC_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-219
|
6i7l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
24683.790
|
11.055
|
18.500
|
21.005
|
11.872
|
43.379
|
56.621
|
15.068
|
5.936
|
47.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
105.786
|
1.874
|
1.036
|
0.622
|
1.149
|
1.644
|
1.316
|
2.196
|
0.000
|
459.125
|
262.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.