Hg_chrom1_TN10mRNA_1630
Organism: Heterodera glycines Gene Locus: chr1:14936156-14938258 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.021 | 0.544 | 0.413 | 0.699 | 0.461 | 0.903 | 0.699 | 1.73 | 1.672 | 0.575 | 1.292 | 2.051 | 0.614 | 0.774 | 1.34 | 1.113 | 1.361 | 2.15 | 0.235 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1565
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.037
|
0.116
|
0.020
|
0.122
|
0.506
|
0.593
|
0.521
|
0.007
|
0.601
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006249
|
1.000
|
1.000
|
Hsc_gene_12676.t1
|
Hsc_gene_12676.t1
|
— |
Q6PFM1.1 Sodium-dependent phosphate transporter 1-B [Danio rerio]
|
KAI1720737.1 phosphate transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:0006817|GO:0016020
|
GO:0008150_0.952|GO:0009987_0.735|GO:0005575_0.731|GO:0110165_0.731|GO:0006810_0.697|GO:0051179_0.697|GO:0051234_0.697|GO:0016020_0.696|GO:0003674_0.676|GO:0055085_0.658|GO:0071944_0.645|GO:0005886_0.628|GO:0005215_0.610|GO:0022857_0.609|GO:0015318_0.539|GO:0015698_0.528|GO:0022804_0.520|GO:0098660_0.515|GO:0015291_0.511|GO:0006811_0.507|GO:0015103_0.506|GO:0034220_0.506
|
IPR001204+29-496_49-486+
|
— |
PF01384+49-486+Phosphate_transporter_family
|
— |
PTHR11101+29-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-501
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
54950.250
|
7.987
|
5.500
|
16.168
|
12.375
|
38.523
|
61.477
|
8.982
|
7.186
|
51.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
237.366
|
25.558
|
37.596
|
155.556
|
455.766
|
431.042
|
242.640
|
252.673
|
3.438
|
435.587
|
250.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.466
|
2.155
|
1.521
|
— |
-0.820
|
-0.882
|
— | — |
5.703
|
3.325
|
— | — |
No JSON data available for plots.