Hg_chrom1_TN10mRNA_1633
Organism: Heterodera glycines Gene Locus: chr1:14943914-14947513 Feature type: polypeptideProtein Sequence
Length: 870
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.829 | 1.123 | 0.857 | 0.872 | 0.9 | 1.326 | 0.493 | 1.667 | 1.328 | 1.336 | 0.435 | 1.487 | 1.852 | 0.884 | 1.361 | 1.379 | 0.509 | 1.028 | 0.796 | 0.879 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1568
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.293
|
0.415
|
0.012
|
0.261
|
0.438
|
0.549
|
0.307
|
0.041
|
0.411
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006252
|
1.000
|
1.000
|
Hsc_gene_12679.t1
|
Hsc_gene_12679.t1
|
— |
Q68FE2.2 Autophagy-related protein 9A [Mus musculus]
|
KAI3421981.1 autophagy protein atg9 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006914
|
GO:0008150_0.894|GO:0005575_0.841|GO:0110165_0.840|GO:0016020_0.792|GO:0009987_0.769|GO:0005622_0.718|GO:0043226_0.676|GO:0043229_0.659|GO:0043227_0.649|GO:0005737_0.641|GO:0043231_0.634|GO:0008152_0.595|GO:0005773_0.592|GO:0071944_0.582|GO:0044237_0.577|GO:0005886_0.568|GO:0003674_0.541|GO:0009056_0.530
|
IPR007241+62-804_74-558+
|
— |
PF04109+74-558+Autophagy_protein_ATG9
|
— |
PTHR13038+62-804+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
680-747;869-870
|
2.000
|
1-679;748-868
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
99068.310
|
7.080
|
9.500
|
22.989
|
14.023
|
45.747
|
54.253
|
12.874
|
10.115
|
47.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1825.914
|
2985.280
|
2407.389
|
2080.329
|
1920.903
|
2315.708
|
2857.667
|
3071.135
|
1077.434
|
565.894
|
785.125
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.539
|
-0.658
|
— |
-0.147
|
0.285
|
0.312
|
0.305
|
— | — | — | — | — | — |
No JSON data available for plots.