Hg_chrom1_TN10mRNA_1636
Organism: Heterodera glycines Gene Locus: chr1:14951648-14953443 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.066 | 0.533 | 0.781 | 0.494 | 1.385 | 0.735 | 0.512 | 1.433 | 1.082 | 1.471 | 0.651 | 1.011 | 1.99 | 0.827 | 1.286 | 1.146 | 0.658 | 1.216 | 1.984 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1571
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.623
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
PWTKRNK
|
25-53
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.177
|
0.269
|
0.044
|
0.204
|
0.894
|
0.527
|
0.638
|
0.012
|
0.204
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006255
|
1.000
|
1.000
|
Hsc_gene_12682.t1
|
Hsc_gene_12682.t1
|
— |
Q9VLQ1.1 Dolichyl-phosphate beta-glucosyltransferase [Drosophila melanogaster]
|
KAH7713109.1 dolichyl-phosphate beta-glucosyltransferase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.885|GO:0005575_0.772|GO:0110165_0.760|GO:0016020_0.718|GO:0009987_0.702|GO:0071944_0.683|GO:0003674_0.675|GO:0005886_0.672|GO:0005622_0.594|GO:0005737_0.589|GO:0003824_0.561|GO:0008152_0.552|GO:0043226_0.549|GO:0044238_0.530|GO:0043229_0.529|GO:0043227_0.524|GO:0044237_0.524|GO:0009058_0.523|GO:0043231_0.517|GO:0016740_0.512|GO:0044249_0.503
|
IPR001173+87-254+|IPR029044+69-331_85-326+|IPR035518+88-315+
|
— |
PF00535+87-254+Glycosyl_transferase_family_2
|
— |
PTHR10859+24-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
5tz8_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
39816.760
|
6.182
|
-2.000
|
26.074
|
14.900
|
43.266
|
56.734
|
13.467
|
12.607
|
45.845
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1056.334
|
858.880
|
1100.654
|
1084.170
|
1205.591
|
1114.297
|
1049.476
|
1054.649
|
1244.197
|
887.921
|
1040.611
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.128
|
0.199
|
— |
0.121
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.