Hg_chrom1_TN10mRNA_164
Organism: Heterodera glycines Gene Locus: chr1:1172905-1175386 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.193 | 0.816 | 0.442 | 0.855 | 0.657 | 1.45 | 1.603 | 1.567 | 1.04 | 0.389 | 2.64 | 2.137 | 0.863 | 1.832 | 0.275 | 0.841 | 1.166 | 0.986 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_159
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.549
|
0.612
|
0.434
|
0.645
|
0.126
|
0.032
|
0.026
|
0.031
|
0.163
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001034
|
4.000
|
1.000
|
Hsc_gene_20540.t1
|
— | — |
A8X181.1 Protein adenylyltransferase fic-1 [Caenorhabditis briggsae]
|
MDL2287967.1 Fic family protein [Oscillospiraceae bacterium OttesenSCG-928-F05]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0003674_0.878|GO:0005575_0.847|GO:0110165_0.837|GO:0003824_0.810|GO:0050896_0.761|GO:0016020_0.739|GO:0006950_0.713|GO:0016740_0.705|GO:0071944_0.669|GO:0016772_0.661|GO:0005886_0.654|GO:0016779_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.604|GO:0005622_0.577|GO:0008152_0.576|GO:0005737_0.574|GO:0044238_0.540|GO:0005488_0.535|GO:0043226_0.518|GO:0043229_0.503
|
IPR003812+26-156_83-134+|IPR036597+12-152_35-136+|IPR040198+24-136+
|
— |
PF02661+83-134+Fic/DOC_family
|
— |
PTHR13504+24-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
17338.110
|
9.491
|
5.500
|
24.359
|
12.179
|
39.103
|
60.897
|
14.744
|
9.615
|
49.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
36.002
|
0.780
|
2.131
|
1.878
|
3.006
|
1.469
|
0.918
|
4.263
|
16.551
|
139.677
|
86.909
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
-2.068
|
— | — |
-5.401
|
— | — |
No JSON data available for plots.