Hg_chrom1_TN10mRNA_1643
Organism: Heterodera glycines Gene Locus: chr1:14964154-14969004 Feature type: polypeptideProtein Sequence
Length: 880
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.595 | 1.374 | 0.785 | 0.901 | 1.061 | 1.078 | 0.582 | 1.08 | 1.515 | 1.244 | 0.826 | 1.003 | 1.294 | 1.027 | 1.183 | 1.623 | 0.894 | 0.809 | 0.874 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1578
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRK,ERKKDKVLHKLGRRNKQK,KRKPNILQILIQRRKRYKN,RKPNILQILIQRRKRYKNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.216
|
0.032
|
0.623
|
0.173
|
0.397
|
0.299
|
0.049
|
0.394
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006260
|
1.000
|
1.000
|
Hsc_gene_12688.t1
|
— | — |
O88588.1 Phosphofurin acidic cluster sorting protein 1 [Rattus norvegicus]
|
KAI1719326.1 PACS-1 cytosolic sorting protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.950|GO:0110165_0.946|GO:0005622_0.863|GO:0008150_0.797|GO:0009987_0.756|GO:0005737_0.735|GO:0051179_0.636|GO:0016020_0.615|GO:0051641_0.562|GO:0043226_0.556|GO:0033036_0.536|GO:0070727_0.534|GO:0043229_0.532|GO:0008104_0.531|GO:0003674_0.520|GO:0043227_0.509
|
IPR019381+242-373_417-880+
|
— |
PF10254+417-880+PACS-1_cytosolic_sorting_protein
|
— |
PTHR13280+242-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
263-322;649-740
|
3.000
|
1-262;323-648;741-880
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
98748.320
|
7.920
|
14.500
|
24.091
|
10.114
|
51.023
|
48.977
|
13.409
|
10.682
|
50.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1099.265
|
1362.650
|
1166.951
|
870.564
|
951.802
|
749.024
|
2299.367
|
1041.691
|
904.692
|
964.997
|
939.152
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.453
|
-0.784
|
-0.314
|
— |
-0.331
|
1.629
|
0.370
|
1.285
|
— | — | — | — | — |
No JSON data available for plots.