Hg_chrom1_TN10mRNA_1646
Organism: Heterodera glycines Gene Locus: chr1:14976822-14983833 Feature type: polypeptideProtein Sequence
Length: 221
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 0.842 | 0.905 | 0.78 | 1.508 | 0.696 | 0.431 | 1.81 | 1.307 | 1.468 | 1.028 | 1.597 | 1.76 | 0.348 | 1.293 | 0.905 | 1.038 | 0.96 | 0.696 | 1.331 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1580
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.735
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-33
|
— |
0.888
|
— |
1.000
|
0.043
|
0.162
|
0.006
|
0.180
|
0.727
|
0.332
|
0.744
|
0.092
|
0.444
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003077
|
2.000
|
1.000
|
Hsc_gene_12690.t1
|
Hsc_gene_12690.t1
|
— |
O35587.1 Transmembrane emp24 domain-containing protein 10 [Mesocricetus auratus]
|
KAF7638446.1 GOLD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.925|GO:0016020_0.841|GO:0005622_0.822|GO:0005737_0.750|GO:0043226_0.743|GO:0043229_0.726|GO:0071944_0.724|GO:0005886_0.716|GO:0043227_0.712|GO:0043231_0.702|GO:0008150_0.682|GO:0009987_0.639|GO:0005773_0.608|GO:0012505_0.567|GO:0051179_0.521|GO:0006810_0.516|GO:0051234_0.516
|
IPR009038+33-215_43-155+|IPR015720+27-215+
|
SM01190+33-215+
|
PF01105+33-215+emp24/gp25L/p24_family/GOLD
|
— |
PTHR22811+27-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-221
|
5azy_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
25957.860
|
6.898
|
2.000
|
30.769
|
15.385
|
49.774
|
50.226
|
16.742
|
14.027
|
40.271
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkmagenta
|
1368.089
|
454.327
|
451.282
|
722.320
|
902.965
|
799.629
|
956.108
|
686.039
|
2211.462
|
2462.039
|
2354.649
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.240
|
0.532
|
0.788
|
0.289
|
— |
0.267
|
— |
0.620
|
— | — | — | — | — |