SCN Proteipedia

Hg_chrom1_TN10mRNA_1648

Organism: Heterodera glycines Gene Locus: chr1:14983847-14987029 Feature type: polypeptide

Protein Sequence

Length: 865

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.632	1.102	0.82	1.435	1.657	1.334	0.261	1.272	1.464	1.375	0.981	1.088	1.156	0.734	1.534	1.387	0.834	0.718	0.178	0.272	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1582	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRHLLDRVVQEKAEKQRKL,RREIERIQNQQLAVRDKAR	—	—	—	—	—	—	0.011	—	—	0.394	0.125	0.011	0.678	0.143	0.215	0.234	0.172	0.211	0.218

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006262	1.000	1.000	Hsc_gene_12691.t1	Hsc_gene_12691.t1	—	Q20548.2 Probable RING finger protein 207 homolog [Caenorhabditis elegans]	KAI3421970.1 protein hexamerization [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008270\|GO:0030544	GO:0008150_0.963\|GO:0005575_0.941\|GO:0110165_0.940\|GO:0009987_0.927\|GO:0065007_0.922\|GO:0050789_0.914\|GO:0050794_0.900\|GO:0005622_0.886\|GO:0003674_0.838\|GO:0032501_0.834\|GO:0005488_0.830\|GO:0005515_0.817\|GO:0048518_0.815\|GO:0008152_0.793\|GO:0043170_0.793\|GO:0048522_0.791\|GO:0019222_0.776\|GO:0051179_0.774\|GO:0031323_0.769\|GO:0044237_0.769\|GO:0060255_0.768\|GO:0009058_0.765\|GO:0009059_0.765\|GO:0010467_0.765\|GO:0044249_0.765\|GO:0051234_0.758\|GO:0006810_0.748\|GO:0005737_0.743\|GO:0009889_0.743\|GO:0031326_0.743\|GO:0010556_0.740\|GO:0009893_0.737\|GO:0010468_0.732\|GO:0010604_0.725\|GO:0031325_0.724\|GO:0009891_0.715\|GO:0031328_0.715\|GO:0065008_0.715\|GO:0010557_0.708\|GO:0003008_0.695\|GO:0010628_0.694\|GO:0030029_0.682\|GO:0003013_0.677\|GO:0006811_0.677\|GO:0055085_0.677\|GO:0008015_0.676\|GO:0034220_0.676\|GO:0003012_0.674\|GO:0001508_0.670\|GO:0003015_0.670\|GO:0006936_0.670\|GO:0006941_0.670\|GO:0030048_0.670\|GO:0042391_0.670\|GO:0060047_0.670\|GO:0060048_0.670\|GO:0060306_0.670\|GO:0060307_0.670\|GO:0070252_0.670\|GO:0086001_0.670\|GO:0086002_0.670\|GO:0086003_0.670\|GO:0086005_0.670\|GO:0086009_0.670\|GO:0086011_0.670\|GO:0086013_0.670\|GO:0098900_0.670\|GO:0098903_0.670\|GO:0098915_0.670\|GO:0099622_0.670\|GO:0099623_0.670\|GO:0099625_0.670\|GO:1905024_0.670\|GO:1905026_0.670\|GO:1905031_0.670\|GO:1905033_0.670\|GO:0030544_0.650\|GO:0031072_0.650\|GO:0044325_0.650\|GO:0051087_0.650\|GO:0048471_0.550	IPR000315+110-157_114-154_164-208+\|IPR001841+53-86+\|IPR017907+68-77+\|IPR039320+44-833+	SM00336+110-157_164-208+	PF00643+114-154+B-box_zinc_finger	—	PTHR22635+44-833+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	663-865	1.000	1-662	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.603	99055.140	7.005	7.000	30.983	7.861	55.723	44.277	16.532	14.451	44.393

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1884.296	3339.668	2137.529	1886.251	1422.095	1732.527	1971.445	2881.026	1600.727	1279.298	1417.053

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.873	-0.961	—	-0.439	0.299	0.198	0.630	-0.404	—	—	—	—	—

No JSON data available for plots.

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