Hg_chrom1_TN10mRNA_1653
Organism: Heterodera glycines Gene Locus: chr1:14992242-14994566 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.368 | 0.912 | 0.998 | 0.811 | 0.654 | 1.006 | 0.747 | 0.98 | 1.656 | 1.06 | 1.129 | 1.384 | 1.416 | 0.83 | 0.72 | 0.56 | 1.029 | 1.426 | 0.603 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1586
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.174
|
0.503
|
0.011
|
0.799
|
0.173
|
0.168
|
0.136
|
0.052
|
0.105
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000367
|
6.000
|
2.000
|
Hsc_gene_12734.t1;Hsc_gene_25079.t1
|
Hsc_gene_12734.t1
|
— |
Q9UAV5.1 Malate dehydrogenase, cytoplasmic [Caenorhabditis elegans]
|
KAI3421925.1 Malate dehydrogenase, cytoplasmic [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0006108|GO:0016491|GO:0016615|GO:0016616|GO:0019752
|
GO:0005575_0.778|GO:0110165_0.777|GO:0008150_0.725|GO:0003674_0.639|GO:0005622_0.614|GO:0005737_0.605|GO:0016020_0.532|GO:0008152_0.503
|
IPR001236+7-147+|IPR001252+157-169+|IPR001557+2-234+|IPR010945+3-230+|IPR015955+157-233_158-230+|IPR022383+158-230+|IPR036291+3-157+
|
— |
PF00056+7-147+lactate/malate_dehydrogenase,_NAD_binding_domain|PF02866+158-230+lactate/malate_dehydrogenase,_alpha/beta_C-terminal_domain
|
G3DSA:3.40.50.720:FF:000010+3-156+Malate_dehydrogenase
|
PTHR23382+3-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-255
|
9d2f_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
27771.390
|
8.482
|
6.500
|
22.353
|
9.804
|
40.392
|
59.608
|
12.941
|
9.412
|
53.725
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
602.199
|
603.128
|
663.771
|
771.719
|
1253.326
|
1109.498
|
1346.303
|
772.600
|
211.177
|
31.108
|
108.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.219
|
0.326
|
0.668
|
— |
0.290
|
-0.625
|
0.944
|
— | — |
6.004
|
7.248
|
— |
No JSON data available for plots.