Hg_chrom1_TN10mRNA_1656
Organism: Heterodera glycines Gene Locus: chr1:15000419-15001611 Feature type: polypeptideProtein Sequence
Length: 338
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.41 | 1.032 | 0.538 | 0.306 | 0.888 | 2.048 | 0.634 | 2.219 | 0.46 | 1.079 | 0.448 | 0.87 | 0.986 | 1.195 | 1.268 | 1.86 | 0.97 | 0.897 | 0.455 | 0.174 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1589
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKSLVRDEAYWERRRKNN,RRKNNDAAKRSRDSRRKKE,RKNNDAAKRSRDSRRKKED,RRRKNNDAAKRSRDSRRKK
|
31-100
|
0.906
|
50-100
|
0.999
|
— | — |
0.000
|
— | — |
0.848
|
0.195
|
0.014
|
0.363
|
0.096
|
0.053
|
0.061
|
0.009
|
0.079
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006267
|
1.000
|
1.000
|
Hsc_gene_12696.t1
|
Hsc_gene_12696.t1
|
— | — |
KAI6225200.1 Protein giant [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0006357
|
— |
IPR004827+228-292_230-282_230-287+|IPR040223+64-285+|IPR046347+230-288+
|
SM00338+228-292+
|
PF07716+230-282+Basic_region_leucine_zipper
|
— |
PTHR11988+64-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;90-264;323-338
|
2.000
|
40-89;265-322
|
8k8a_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
36377.370
|
8.767
|
10.500
|
21.893
|
9.172
|
53.254
|
46.746
|
13.609
|
8.284
|
56.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
175.927
|
215.764
|
67.728
|
53.792
|
125.284
|
701.110
|
64.207
|
116.457
|
52.425
|
226.232
|
151.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.902
|
-2.141
|
— |
1.189
|
2.498
|
-3.439
|
-2.708
|
— | — | — | — | — | — |
No JSON data available for plots.