Hg_chrom1_TN10mRNA_1657
Organism: Heterodera glycines Gene Locus: chr1:15002883-15004371 Feature type: polypeptideProtein Sequence
Length: 354
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 1.182 | 0.976 | 0.487 | 0.942 | 0.435 | 0.538 | 3.39 | 1.193 | 1.336 | 0.642 | 1.329 | 1.962 | 0.924 | 1.326 | 0.928 | 0.556 | 1.027 | 0.869 | 0.997 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.119
|
0.420
|
0.050
|
0.397
|
0.753
|
0.353
|
0.394
|
0.003
|
0.096
|
0.559
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006268
|
1.000
|
1.000
|
Hsc_gene_12697.t1
|
— | — |
Q5ZIN0.1 Lysophosphatidylserine lipase ABHD12 [Gallus gallus]
|
KAH7715362.1 Protein Y97E10AL.2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.872|GO:0005575_0.726|GO:0110165_0.723|GO:0009987_0.652|GO:0016020_0.626|GO:0005622_0.597|GO:0003674_0.583|GO:0005737_0.568|GO:0071944_0.543|GO:0008152_0.524|GO:0003824_0.513|GO:0043226_0.507
|
IPR000073+123-184+|IPR029058+69-337_94-343+
|
— |
PF00561+123-184+alpha/beta_hydrolase_fold
|
— |
PTHR12277+35-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
40694.540
|
7.533
|
11.000
|
28.531
|
18.362
|
45.198
|
54.802
|
17.514
|
11.017
|
46.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
1315.124
|
700.170
|
1011.627
|
1225.955
|
1514.243
|
2984.901
|
1666.868
|
1824.478
|
761.427
|
1084.504
|
946.043
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.302
|
0.671
|
0.386
|
0.273
|
0.994
|
-0.830
|
-0.817
|
— | — | — | — | — | — |
No JSON data available for plots.