Hg_chrom1_TN10mRNA_1664
Organism: Heterodera glycines Gene Locus: chr1:15028242-15029002 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.589 | 1.276 | 2.378 | 0.291 | 1.688 | 1.082 | 1.005 | 1.055 | 0.938 | 0.456 | 0.831 | 1.737 | 1.406 | 0.73 | 1.033 | 1.447 | 0.692 | 0.256 | 0.325 | 1.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1597
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRRDDPFGTLIQSTKKMR,KRRDDPFGTLIQSTKKMRL,RRSHPRGMPRMIRLRRKRR
|
45-75
|
0.976
|
25-54
|
0.972
|
— | — |
0.000
|
— | — |
0.937
|
0.168
|
0.014
|
0.389
|
0.054
|
0.030
|
0.023
|
0.019
|
0.027
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006274
|
1.000
|
1.000
|
Hsc_gene_12705.t1
|
— | — | — |
KAF7638437.1 Iwr1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013883+112-166+
|
— |
PF08574+112-166+Transcription_factor_Iwr1
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-237
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
26786.490
|
4.075
|
-27.500
|
35.865
|
11.814
|
59.916
|
40.084
|
12.658
|
23.207
|
52.743
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
1325.288
|
978.929
|
524.183
|
519.898
|
655.018
|
474.360
|
1065.283
|
541.856
|
1215.044
|
3102.030
|
2293.322
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.131
|
-1.050
|
— |
0.301
|
-0.451
|
1.179
|
— |
1.119
|
— | — | — | — | — |
No JSON data available for plots.