Hg_chrom1_TN10mRNA_1665
Organism: Heterodera glycines Gene Locus: chr1:15029329-15029771 Feature type: polypeptideProtein Sequence
Length: 115
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 1.618 | 0.949 | 0.0 | 2.029 | 0.446 | 0.311 | 1.739 | 0.773 | 1.763 | 1.318 | 1.023 | 1.449 | 1.338 | 1.065 | 0.124 | 0.998 | 0.922 | 0.0 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1598
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.788
|
0.281
|
0.023
|
0.407
|
0.132
|
0.169
|
0.080
|
0.006
|
0.067
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006275
|
1.000
|
1.000
|
Hsc_gene_12706.t1
|
Hsc_gene_12706.t1
|
— |
O08740.1 DNA-directed RNA polymerase II subunit RPB11 [Mus musculus]
|
KAI3421955.1 DNA-directed RNA polymerase II subunit RPB11-a [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001055|GO:0003677|GO:0003899|GO:0005665|GO:0006351|GO:0006366|GO:0046983
|
GO:0005575_0.893|GO:0110165_0.819|GO:0005622_0.795|GO:0043226_0.732|GO:0016020_0.728|GO:0043229_0.707|GO:0032991_0.702|GO:0043227_0.664|GO:0043231_0.647|GO:1902494_0.561|GO:0008150_0.560|GO:0005634_0.556|GO:0140535_0.542|GO:1990234_0.532|GO:0061695_0.531|GO:0000428_0.530|GO:0030880_0.530|GO:0009987_0.512
|
IPR008193+35-66+|IPR009025+31-103+|IPR022905+23-105+|IPR036603+1-112_1-115+|IPR037685+14-105+
|
— |
PF13656+31-103+RNA_polymerase_Rpb3/Rpb11_dimerisation_domain
|
G3DSA:3.30.1360.10:FF:000003+1-115+DNA-directed_RNA_polymerase_II_subunit_RPB11
|
PTHR13946+8-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-115
|
9eh1_K
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
13222.130
|
5.644
|
-2.000
|
34.783
|
10.435
|
50.435
|
49.565
|
17.391
|
17.391
|
43.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
677.582
|
567.510
|
401.107
|
420.149
|
490.760
|
381.668
|
660.456
|
566.884
|
645.486
|
1172.107
|
946.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.730
|
-0.571
|
0.176
|
0.192
|
-0.348
|
0.804
|
0.467
|
0.365
|
— | — | — | — | — |
No JSON data available for plots.