Hg_chrom1_TN10mRNA_1666
Organism: Heterodera glycines Gene Locus: chr1:15029945-15033227 Feature type: polypeptideProtein Sequence
Length: 666
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.786 | 1.641 | 1.092 | 0.414 | 1.001 | 1.348 | 0.679 | 1.051 | 1.268 | 1.075 | 0.683 | 1.148 | 1.502 | 1.213 | 1.379 | 1.094 | 0.935 | 0.774 | 0.693 | 0.574 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1599
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRR
|
— | — |
29-59
|
0.935
|
— | — |
0.000
|
— | — |
0.506
|
0.206
|
0.006
|
0.696
|
0.114
|
0.106
|
0.057
|
0.015
|
0.071
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006276
|
1.000
|
1.000
|
Hsc_gene_12707.t1
|
Hsc_gene_12707.t1
|
— |
P09052.3 ATP-dependent RNA helicase vasa [Drosophila melanogaster]
|
KAI1726250.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.837|GO:0110165_0.834|GO:0005622_0.764|GO:0008150_0.763|GO:0003674_0.686|GO:0005737_0.683|GO:0043226_0.658|GO:0009987_0.652|GO:0043229_0.637|GO:0005488_0.546
|
IPR000629+346-354+|IPR001650+447-594_453-552_469-552+|IPR011545+212-390+|IPR014001+207-419_220-403+|IPR014014+188-216+|IPR027417+157-404_268-567_405-593+
|
SM00487+207-419+|SM00490+469-552+
|
PF00270+212-390+DEAD/DEAH_box_helicase|PF00271+453-552+Helicase_conserved_C-terminal_domain
|
— |
PTHR47958+181-565+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-179;605-666
|
1.000
|
180-604
|
4d26_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
74891.220
|
6.737
|
2.000
|
25.375
|
10.360
|
51.051
|
48.949
|
13.363
|
12.012
|
51.502
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
846.346
|
1440.762
|
827.739
|
775.177
|
898.312
|
924.704
|
1968.316
|
755.020
|
415.806
|
544.648
|
489.430
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.030
|
-1.031
|
— |
0.181
|
— |
1.101
|
-0.399
|
1.526
|
— | — | — | — | — |
No JSON data available for plots.