Hg_chrom1_TN10mRNA_1667
Organism: Heterodera glycines Gene Locus: chr1:15034271-15037072 Feature type: polypeptideProtein Sequence
Length: 422
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 0.606 | 0.991 | 0.327 | 1.145 | 2.187 | 1.213 | 0.711 | 0.948 | 0.929 | 0.646 | 1.255 | 1.448 | 0.729 | 1.548 | 1.659 | 0.738 | 0.539 | 0.365 | 0.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1600
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KAKERRA,KRHNERVERLPLRAFKK,RKSPPTIALPQNNSKKAKE
|
78-99
|
0.991
|
1-52
|
0.993
|
— | — |
0.000
|
— | — |
0.156
|
0.080
|
0.039
|
0.711
|
0.061
|
0.288
|
0.231
|
0.021
|
0.322
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003078
|
1.000
|
2.000
|
Hsc_gene_12708.t1;Hsc_gene_12708.t2
|
Hsc_gene_12708.t1;Hsc_gene_12708.t2;Hsc_gene_12708.t3
|
— |
P05419.1 Neo-calmodulin [Gallus gallus]
|
KAI1723173.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.841|GO:0110165_0.831|GO:0005622_0.765|GO:0008150_0.755|GO:0016020_0.687|GO:0009987_0.683|GO:0003674_0.649|GO:0005737_0.639|GO:0043226_0.573|GO:0043229_0.568|GO:0005488_0.545|GO:0065007_0.510
|
IPR002048+242-277_246-274_246-308_248-307_278-313_282-310_321-356_325-353+|IPR011992+240-385+|IPR018247+255-267_291-303_334-346+|IPR050145+241-380+
|
SM00054+246-274_282-310_325-353+
|
PF13499+248-307+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000355+225-314+Uncharacterized_calcium-binding_protein_B0563.7
|
PTHR23050+241-380+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-239
|
1.000
|
240-422
|
7nqc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
45891.860
|
6.758
|
1.000
|
25.592
|
8.057
|
52.844
|
47.156
|
13.270
|
12.322
|
51.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
378.871
|
627.540
|
934.380
|
302.164
|
91.654
|
74.853
|
194.904
|
320.407
|
71.218
|
649.434
|
401.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.344
|
-1.192
|
-1.520
|
-1.752
|
— |
1.392
|
1.994
|
-0.574
|
— | — | — | — | — |
No JSON data available for plots.