Hg_chrom1_TN10mRNA_1670
Organism: Heterodera glycines Gene Locus: chr1:15044341-15048595 Feature type: polypeptideProtein Sequence
Length: 716
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 1.137 | 0.914 | 1.348 | 1.094 | 1.576 | 1.081 | 1.397 | 0.776 | 0.906 | 0.868 | 1.397 | 1.28 | 0.591 | 1.767 | 0.938 | 0.664 | 0.741 | 0.752 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1603
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRRRRR,RRHQREFASLRKSRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.261
|
0.219
|
0.019
|
0.188
|
0.134
|
0.028
|
0.126
|
0.035
|
0.138
|
0.836
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006278
|
1.000
|
1.000
|
Hsc_gene_12712.t1
|
Hsc_gene_12711.t1;Hsc_gene_12711.t2;Hsc_gene_12712.t1
|
— |
Q7JLI1.1 Zinc metalloproteinase nas-31 [Caenorhabditis elegans]
|
KAI3421950.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.786|GO:0005575_0.647|GO:0110165_0.640|GO:0003674_0.613|GO:0032501_0.571|GO:0032502_0.530|GO:0048856_0.530
|
IPR000859+462-580_469-580+|IPR001506+197-413_209-413_231-249_285-303_304-321_343-358_398-411+|IPR003582+617-652_617-653_676-716_677-716_683-716+|IPR006026+205-348+|IPR017050+6-73_81-715+|IPR024079+129-415+|IPR034035+213-410+|IPR035914+457-583_460-580+
|
SM00042+469-580+|SM00235+205-348+|SM00254+617-653_676-716+
|
PF01400+209-413+Astacin_(Peptidase_family_M12A)|PF01549+617-652_683-716+ShK_domain-like
|
— |
PTHR10127+137-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55;162-215
|
2.000
|
56-161;216-716
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
80041.300
|
8.766
|
30.000
|
28.771
|
10.335
|
50.419
|
49.581
|
17.179
|
11.592
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
280.854
|
315.321
|
286.175
|
199.728
|
97.957
|
250.668
|
180.438
|
174.691
|
49.510
|
627.235
|
379.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.369
|
-0.796
|
-0.410
|
-1.060
|
1.371
|
-0.464
|
-0.628
|
— | — | — | — | — | — |
No JSON data available for plots.