Hg_chrom1_TN10mRNA_1672
Organism: Heterodera glycines Gene Locus: chr1:15051351-15055104 Feature type: polypeptideProtein Sequence
Length: 937
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.645 | 1.564 | 1.203 | 0.736 | 1.53 | 1.177 | 0.546 | 1.014 | 1.233 | 1.413 | 0.841 | 1.067 | 1.127 | 0.821 | 1.067 | 1.25 | 0.84 | 0.776 | 0.657 | 0.534 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1605
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSGVDPLFPSLLRKRKAN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.811
|
0.049
|
0.006
|
0.427
|
0.122
|
0.137
|
0.142
|
0.010
|
0.111
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006280
|
1.000
|
1.000
|
Hsc_gene_12714.t1
|
Hsc_gene_12714.t1
|
— |
Q6P2K6.1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A [Mus musculus]
|
KAF7638431.1 SMK-1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.931|GO:0110165_0.925|GO:0005622_0.871|GO:0008150_0.852|GO:0016020_0.843|GO:0043226_0.809|GO:0009987_0.808|GO:0043229_0.790|GO:0065007_0.773|GO:0050789_0.760|GO:0043227_0.740|GO:0050794_0.740|GO:0043231_0.715|GO:0005634_0.665|GO:0005737_0.622|GO:0008152_0.550|GO:0032991_0.543|GO:0044238_0.543
|
IPR006887+237-727+|IPR011993+88-208+|IPR016024+405-714+|IPR051137+65-919+
|
— |
PF04802+237-727+Phosphatase_4_regulatory_subunit_3|PF22972+92-188+EVH1-like_domain_in_PP4R3_protein
|
— |
PTHR23318+65-919+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;735-937
|
1.000
|
85-734
|
4wsf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
105788.710
|
4.652
|
-37.500
|
28.602
|
8.751
|
53.789
|
46.211
|
12.807
|
15.795
|
48.879
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1755.966
|
1785.970
|
1141.638
|
1117.546
|
1382.692
|
1917.177
|
2823.474
|
1475.810
|
846.057
|
2681.195
|
1894.707
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.875
|
-0.814
|
— |
0.276
|
0.486
|
0.568
|
-0.485
|
1.079
|
— | — | — | — | — |
No JSON data available for plots.