Hg_chrom1_TN10mRNA_1673
Organism: Heterodera glycines Gene Locus: chr1:15055548-15056747 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.158 | 0.737 | 1.81 | 0.0 | 1.508 | 1.972 | 0.485 | 0.0 | 1.307 | 1.04 | 1.371 | 2.928 | 0.88 | 0.957 | 0.831 | 0.84 | 0.742 | 0.686 | 0.0 | 0.399 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.675
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.169
|
0.470
|
0.067
|
0.391
|
0.234
|
0.565
|
0.204
|
0.111
|
0.227
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006281
|
1.000
|
1.000
|
Hsc_gene_12715.t1
|
Hsc_gene_12715.t1
|
— |
Q9VVI9.2 Charged multivesicular body protein 5 [Drosophila melanogaster]
|
KAI1719249.1 snf7 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007034
|
GO:0008150_0.854|GO:0005575_0.844|GO:0110165_0.840|GO:0005622_0.829|GO:0043226_0.714|GO:0009987_0.711|GO:0016020_0.709|GO:0043229_0.659|GO:0043227_0.652|GO:0005737_0.582|GO:0043231_0.578|GO:0051179_0.569|GO:0051641_0.561|GO:0051234_0.555|GO:0006810_0.550|GO:0051649_0.542|GO:0046907_0.532
|
IPR005024+3-176_14-196+
|
— |
PF03357+14-196+Snf7
|
— |
PTHR22761+3-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;120-221
|
1.000
|
30-119
|
3um1_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
24715.940
|
4.355
|
-13.000
|
32.127
|
4.525
|
53.394
|
46.606
|
13.122
|
19.005
|
47.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey60
|
1102.462
|
737.144
|
978.996
|
857.475
|
1144.659
|
1113.540
|
1423.388
|
1341.475
|
804.576
|
1371.085
|
1128.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.180
|
— | — |
0.385
|
— |
0.365
|
— |
0.229
|
— | — | — | — | — |
No JSON data available for plots.