Hg_chrom1_TN10mRNA_168
Organism: Heterodera glycines Gene Locus: chr1:1191265-1197295 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 1.138 | 0.527 | 0.375 | 1.51 | 1.626 | 0.949 | 1.268 | 0.966 | 1.175 | 0.906 | 2.025 | 1.51 | 1.01 | 1.664 | 0.543 | 0.891 | 0.714 | 0.557 | 0.16 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_163
|
— | — |
1.000
|
— |
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKRK
|
17-57
|
0.791
|
36-76
|
0.999
|
— | — |
0.000
|
— | — |
0.365
|
0.318
|
0.045
|
0.415
|
0.522
|
0.117
|
0.287
|
0.012
|
0.247
|
0.402
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_20355.t1
|
— |
G5EDM4.1 Na(+)/H(+) exchange regulatory cofactor-like protein nrfl-1 [Caenorhabditis elegans]
|
KAH7725447.1 Protein NRFL-1 a, partial [Aphelenchus avenae]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.916|GO:0110165_0.916|GO:0003674_0.862|GO:0016020_0.830|GO:0005488_0.800|GO:0071944_0.763|GO:0005515_0.761|GO:0005886_0.745|GO:0060090_0.658|GO:0030674_0.656|GO:0043495_0.650|GO:0098590_0.586|GO:0016324_0.540|GO:0045177_0.540
|
IPR003812+446-552+|IPR036034+89-155+|IPR036597+405-549_456-548+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-281;345-417
|
3.000
|
1-143;282-344;418-552
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
62145.080
|
9.927
|
19.000
|
28.623
|
9.239
|
49.094
|
50.906
|
16.667
|
11.957
|
44.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
55.312
|
2.430
|
5.757
|
10.676
|
2.793
|
2.770
|
2.830
|
3.471
|
60.641
|
184.988
|
131.696
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.993
|
0.995
|
-1.965
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.