Hg_chrom1_TN10mRNA_1680
Organism: Heterodera glycines Gene Locus: chr1:15070444-15072760 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.282 | 1.133 | 0.699 | 0.442 | 1.197 | 1.315 | 0.794 | 1.154 | 1.254 | 1.04 | 0.622 | 1.508 | 1.353 | 0.69 | 1.413 | 0.916 | 0.967 | 0.894 | 1.381 | 0.679 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1613
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.784
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.374
|
0.282
|
0.203
|
0.642
|
0.153
|
0.228
|
0.168
|
0.337
|
0.134
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006285
|
1.000
|
1.000
|
Hsc_gene_12721.t1
|
Hsc_gene_12721.t1
|
— |
Q9UBR1.1 Beta-ureidopropionase [Homo sapiens]
|
KAF7634077.1 CN hydrolase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.792|GO:0005575_0.750|GO:0110165_0.747|GO:0003674_0.735|GO:0009987_0.674|GO:0005622_0.666|GO:0008152_0.662|GO:0003824_0.628|GO:0005737_0.624|GO:0044238_0.590|GO:0016787_0.556|GO:0044281_0.531|GO:0016810_0.515|GO:0016811_0.510
|
IPR003010+76-349_77-356+|IPR036526+6-390_74-371+|IPR050345+53-375+
|
— |
PF00795+77-356+Carbon-nitrogen_hydrolase
|
G3DSA:3.60.110.10:FF:000008+6-390+Beta-alanine_synthase
|
PTHR43674+53-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
390-390
|
1.000
|
1-389
|
8pt4_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
43554.420
|
7.455
|
4.500
|
24.359
|
11.282
|
46.667
|
53.333
|
13.333
|
11.026
|
49.487
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
645.309
|
301.782
|
1097.924
|
455.863
|
827.440
|
1174.109
|
714.447
|
1515.256
|
304.305
|
312.441
|
308.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.635
|
0.458
|
-1.160
|
0.828
|
0.519
|
-0.706
|
— |
-0.941
|
— | — | — | — | — |
No JSON data available for plots.