Hg_chrom1_TN10mRNA_1682
Organism: Heterodera glycines Gene Locus: chr1:15076475-15077746 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.49 | 1.095 | 0.519 | 0.703 | 1.236 | 0.861 | 1.205 | 1.606 | 1.262 | 0.456 | 1.417 | 1.506 | 1.274 | 1.844 | 0.731 | 1.037 | 0.867 | 0.463 | 0.974 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1615
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.544
|
0.160
|
0.212
|
0.740
|
0.150
|
0.290
|
0.147
|
0.026
|
0.153
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006287
|
1.000
|
1.000
|
Hsc_gene_12723.t1
|
Hsc_gene_12723.t1;Hsc_gene_2402.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7638997.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.802|GO:0003674_0.784|GO:0005575_0.744|GO:0110165_0.738|GO:0009987_0.732|GO:0003824_0.689|GO:0005622_0.635|GO:0016787_0.601|GO:0140096_0.590|GO:0016788_0.581|GO:0016020_0.579|GO:0005737_0.578|GO:0016791_0.568|GO:0042578_0.568|GO:0004721_0.564|GO:0065007_0.508
|
IPR004843+87-284+|IPR006186+59-332_87-114_116-143_149-173_150-155_187-213_217-244_274-294_296-312+|IPR029052+31-331_59-331+|IPR050341+52-322+
|
SM00156+59-332+
|
PF00149+87-284+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+52-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-332
|
4iyp_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
37416.100
|
9.064
|
10.000
|
24.699
|
11.747
|
43.072
|
56.928
|
14.458
|
10.241
|
48.193
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
2325.493
|
29.752
|
71.736
|
169.416
|
405.651
|
3480.583
|
467.855
|
4368.705
|
0.000
|
6801.397
|
3886.513
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.040
|
2.372
|
1.348
|
1.229
|
3.115
|
-2.884
|
— |
-3.076
|
-13.527
|
8.261
|
-3.640
|
— | — |
No JSON data available for plots.