Hg_chrom1_TN10mRNA_1684
Organism: Heterodera glycines Gene Locus: chr1:15079859-15082528 Feature type: polypeptideProtein Sequence
Length: 671
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 0.624 | 1.111 | 0.668 | 1.615 | 0.802 | 2.626 | 0.596 | 0.298 | 0.222 | 1.513 | 0.263 | 0.166 | 0.344 | 0.852 | 1.192 | 0.611 | 0.271 | 0.115 | 4.296 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1617
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRKR
|
— | — | — | — |
1-22
|
0.994
|
1.000
|
0.000
|
0.000
|
0.278
|
0.142
|
0.032
|
0.330
|
0.102
|
0.028
|
0.038
|
0.015
|
0.077
|
0.901
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006289
|
1.000
|
1.000
|
Hsc_gene_12725.t1
|
Hsc_gene_12725.t1
|
— | — |
KAI3421939.1 TATA-binding protein-associated factor 2N [Globodera pallida]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
79-271;334-378;504-671
|
3.000
|
1-78;272-333;379-503
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
73101.670
|
5.474
|
-7.000
|
31.148
|
16.542
|
49.031
|
50.969
|
15.350
|
15.797
|
53.055
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
1768.783
|
32.089
|
122.664
|
91.860
|
259.255
|
1191.514
|
15202.739
|
446.426
|
0.691
|
1232.951
|
704.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.707
|
1.379
|
-0.310
|
1.464
|
2.213
|
3.686
|
-1.520
|
5.233
|
-7.009
|
6.895
|
— | — | — |