Hg_chrom1_TN10mRNA_1685
Organism: Heterodera glycines Gene Locus: chr1:15083088-15085777 Feature type: polypeptideProtein Sequence
Length: 631
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.032 | 0.807 | 0.492 | 3.354 | 0.691 | 1.132 | 0.555 | 0.211 | 0.3 | 2.257 | 0.28 | 0.44 | 0.335 | 1.617 | 0.838 | 0.753 | 0.456 | 0.0 | 1.911 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1618
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
nucleus
|
KRKR,KKEEKGREEEDKKEQKR,KKEKRREEKKEARKEER,KKEQKREERTEKAKDDRR,RRAEEKKEEGGKNKEKRT,KKEEKKEKKREGKKELRK,KKEKKREGKKELRKEGKR,KKELRKEGKREGKKELRK,KKELRKEEGNDAKKEERK,RKEDRKRVRHEEKRDGKK,KRDGKKEKRREEKKEARK,RKEERMDKNEEEVREKEK,RRREGRRDKYGNSKRHRG,KRTEEKKELKKEEEKDAKK,KKEEEKDAKKEENAKKEEK,KKEENAKKEEKKEKKREGK,KKREGKKELRKEGKREGKK,RKEEGNDAKKEERKEDRKR,RKRVRHEEKRDGKKEKRRE,KRVRHEEKRDGKKEKRREE,RRKGDKQYQEDNRRREGRR
|
— | — | — | — | — |
0.904
|
0.494
|
0.000
|
— |
0.352
|
0.106
|
0.007
|
0.430
|
0.042
|
0.031
|
0.096
|
0.011
|
0.109
|
0.885
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003082
|
1.000
|
2.000
|
Hsc_gene_12726.t1;Hsc_gene_12726.t2
|
— | — | — |
CAD2144329.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-424
|
1.000
|
425-631
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
73019.110
|
5.570
|
-7.500
|
48.494
|
9.192
|
66.086
|
33.914
|
23.930
|
24.564
|
41.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1254.361
|
136.475
|
316.967
|
188.608
|
447.861
|
972.426
|
9739.049
|
585.564
|
261.515
|
646.585
|
481.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.985
|
0.329
|
-0.639
|
1.216
|
1.131
|
3.337
|
-0.832
|
4.198
|
— | — | — | — | — |