SCN Proteipedia

Hg_chrom1_TN10mRNA_1688

Organism: Heterodera glycines Gene Locus: chr1:15098269-15110317 Feature type: polypeptide

Protein Sequence

Length: 2,317

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.044	0.823	1.201	0.253	1.906	2.025	0.514	1.467	0.921	1.487	0.817	1.65	0.815	0.448	1.823	0.61	0.587	0.713	1.129	0.584	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1621	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.984

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	PEKKRRG,KKRRGFFSRAKK,RRERAMEEERRRRAG,RKSDLVEVARLRKQRL	—	—	—	—	—	—	0.000	—	—	0.248	0.120	0.017	0.613	0.148	0.229	0.317	0.010	0.658	0.057

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003083	1.000	2.000	Hsc_gene_12730.t1;Hsc_gene_12730.t2	Hsc_gene_12730.t1;Hsc_gene_12730.t2	—	Q00963.2 Spectrin beta chain [Drosophila melanogaster]	KAI1721003.1 spectrin repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0005200\|GO:0005515\|GO:0005543\|GO:0008091	GO:0008150_0.910\|GO:0005575_0.909\|GO:0110165_0.902\|GO:0005622_0.866\|GO:0009987_0.863\|GO:0043226_0.797\|GO:0003674_0.795\|GO:0016020_0.783\|GO:0005737_0.770\|GO:0043229_0.766\|GO:0005488_0.724\|GO:0071944_0.696\|GO:0043228_0.692\|GO:0043232_0.692\|GO:0071840_0.679\|GO:0016043_0.676\|GO:0005515_0.667\|GO:0005886_0.661\|GO:0005856_0.569\|GO:0065007_0.552\|GO:0050789_0.531\|GO:0008092_0.521\|GO:0050794_0.507\|GO:0006996_0.501	IPR001589+51-60_125-149+\|IPR001605+2142-2161_2162-2183_2205-2222_2225-2243+\|IPR001715+49-153_50-153_51-151_168-273_169-273_170-268+\|IPR001849+2139-2250_2140-2252_2143-2248+\|IPR002017+299-407_418-520_526-634_638-740_745-845_850-951_954-1059_1062-1164_1170-1272_1275-1375_1380-1483_1488-1589_1593-1696_1699-1802_1806-1908_1912-2013_2018-2081+\|IPR011993+2136-2251+\|IPR016343+2-2120_2113-2316+\|IPR018159+298-523_300-406_420-520_421-635_526-634_638-848_640-740_744-954_746-845_850-1060_851-951_957-1058_959-1166_1064-1165_1170-1379_1171-1271_1277-1376_1380-1591_1382-1483_1489-1589_1593-1805_1595-1695_1701-1802_1806-2027_1808-1908_1914-2014_2020-2153+\|IPR036872+35-273_38-157_158-275+	SM00033+51-151_170-268+\|SM00150+300-406_420-520_526-634_640-740_746-845_851-951_957-1058_1064-1165_1171-1271_1277-1376_1382-1483_1489-1589_1595-1695_1701-1802_1808-1908_1914-2014_2020-2153+\|SM00233+2140-2252+	PF00169+2143-2248+PH_domain\|PF00307+50-153_169-273+Calponin_homology_(CH)_domain\|PF00435+299-407_418-520_526-634_638-740_745-845_850-951_954-1059_1062-1164_1170-1272_1275-1375_1380-1483_1488-1589_1593-1696_1699-1802_1806-1908_1912-2013_2018-2081+Spectrin_repeat	G3DSA:1.10.418.10:FF:000003+158-277+Spectrin_beta_chain\|G3DSA:1.10.418.10:FF:000004+38-157+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000011+2017-2092+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000018+1909-2016+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000019+1594-1897+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000028+1063-1162+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000033+1274-1375+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000106+523-636+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000172+289-409+Spectrin_beta_chain\|G3DSA:1.20.58.60:FF:000229+849-1062+Spectrin_beta_chain\|G3DSA:2.30.29.30:FF:000024+2136-2252+Spectrin_beta_chain	PTHR11915+40-2206+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	883-936;1318-1466;2089-2132;2245-2317	4.000	1-882;937-1317;1467-2088;2133-2244	4d1e_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.813	269721.760	5.292	-52.000	35.304	9.322	54.596	45.404	17.264	18.041	39.059

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	5614.709	12764.953	13262.394	6566.268	4741.049	7878.374	4694.706	5385.158	3441.453	1248.422	2188.293

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.174	-1.096	-0.905	-0.502	0.747	-0.737	-0.654	—	—	—	—	—	—

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