Hg_chrom1_TN10mRNA_1689
Organism: Heterodera glycines Gene Locus: chr1:15110656-15113325 Feature type: polypeptideProtein Sequence
Length: 640
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 1.09 | 0.71 | 0.216 | 1.302 | 1.242 | 0.986 | 1.328 | 0.66 | 1.204 | 0.734 | 0.827 | 1.215 | 1.322 | 1.276 | 1.406 | 0.717 | 0.734 | 1.683 | 0.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1622
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.591
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KTEEG
|
2-23
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.175
|
0.062
|
0.015
|
0.230
|
0.397
|
0.301
|
0.604
|
0.019
|
0.389
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006292
|
1.000
|
1.000
|
Hsc_gene_12731.t1
|
Hsc_gene_12731.t1
|
— | — |
KAH7701986.1 Rhodanese-like domain containing protein [Aphelenchus avenae]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016783
|
GO:0005575_0.935|GO:0110165_0.930|GO:0016020_0.878|GO:0005622_0.839|GO:0071944_0.822|GO:0005886_0.809|GO:0005737_0.750|GO:0005829_0.574|GO:0030312_0.563|GO:0005618_0.550|GO:0009274_0.540
|
IPR001763+357-470_511-632_517-626_554-635+|IPR036873+348-476_351-461_503-627_503-636+|IPR045078+408-633+
|
SM00450+357-470_511-632+
|
PF00581+517-626+Rhodanese-like_domain
|
— |
PTHR11364+408-633+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-196;236-345
|
2.000
|
197-235;346-640
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
70242.550
|
6.975
|
4.500
|
25.469
|
10.312
|
49.219
|
50.781
|
13.750
|
11.719
|
52.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
419.097
|
274.628
|
159.241
|
581.034
|
1767.160
|
1002.865
|
333.922
|
251.242
|
2.747
|
192.705
|
111.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.016
|
0.945
|
1.976
|
1.573
|
-0.801
|
-1.577
|
-2.102
|
0.553
|
-6.206
|
7.899
|
3.534
|
— | — |
No JSON data available for plots.