Hg_chrom1_TN10mRNA_169
Organism: Heterodera glycines Gene Locus: chr1:1199911-1202598 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.25 | 0.684 | 0.371 | 1.703 | 0.689 | 0.96 | 2.151 | 1.434 | 1.162 | 0.081 | 2.214 | 2.24 | 0.827 | 2.194 | 0.384 | 0.529 | 0.896 | 1.654 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_164
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.635
|
0.403
|
0.090
|
0.603
|
0.089
|
0.211
|
0.180
|
0.006
|
0.035
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001034
|
4.000
|
1.000
|
Hsc_gene_20540.t1
|
— | — |
A8X181.1 Protein adenylyltransferase fic-1 [Caenorhabditis briggsae]
|
KHJ79582.1 Fic family protein [Oesophagostomum dentatum]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0003674_0.883|GO:0003824_0.846|GO:0005575_0.818|GO:0110165_0.815|GO:0050896_0.750|GO:0016020_0.729|GO:0016740_0.717|GO:0006950_0.711|GO:0016772_0.662|GO:0016779_0.655|GO:0070566_0.650|GO:0070733_0.650|GO:0071944_0.647|GO:0005886_0.646|GO:0009987_0.607|GO:0005622_0.595|GO:0005737_0.595|GO:0008152_0.594|GO:0044238_0.551|GO:0043226_0.523|GO:0005488_0.521|GO:0043229_0.518|GO:0043227_0.509
|
IPR003812+29-178_58-137+|IPR036597+13-185_38-184+|IPR040198+27-164+
|
— |
PF02661+58-137+Fic/DOC_family
|
— |
PTHR13504+27-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
6i7g_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
21760.830
|
6.296
|
-1.000
|
29.570
|
16.129
|
43.548
|
56.452
|
15.591
|
13.978
|
40.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
11.908
|
0.149
|
3.402
|
10.727
|
2.625
|
0.257
|
2.737
|
1.503
|
28.519
|
22.682
|
25.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.244
|
5.997
|
1.768
|
-2.058
|
-3.362
|
3.433
|
— | — | — | — | — | — | — |
No JSON data available for plots.