Hg_chrom1_TN10mRNA_1693
Organism: Heterodera glycines Gene Locus: chr1:15132018-15133345 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.107 | 0.866 | 0.684 | 0.595 | 0.611 | 0.85 | 2.579 | 0.705 | 0.912 | 0.722 | 0.934 | 1.213 | 1.145 | 1.782 | 1.134 | 1.041 | 1.263 | 2.137 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1626
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.788
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RLNKRRN,KRRNDGSKQRKTERTKKV,RRNDGSKQRKTERTKKVIK
|
26-46
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.599
|
0.117
|
0.003
|
0.390
|
0.103
|
0.135
|
0.127
|
0.001
|
0.234
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001729
|
3.000
|
1.000
|
Hsc_gene_12760.t1
|
Hsc_gene_12760.t1;Hsc_gene_25080.t1
|
— |
A8XT88.1 F-box/SPRY domain-containing protein 1 [Caenorhabditis briggsae]
|
KAI1716573.1 SPRY domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.923|GO:0005575_0.817|GO:0110165_0.812|GO:0008152_0.802|GO:0044238_0.778|GO:0043170_0.756|GO:0019538_0.718|GO:0005622_0.704|GO:0009056_0.700|GO:0009057_0.686|GO:0030163_0.676|GO:0009987_0.632|GO:0003674_0.582|GO:0005737_0.564|GO:0065007_0.549|GO:0050789_0.541|GO:0006508_0.525|GO:0006511_0.517|GO:0019941_0.517|GO:0043632_0.517|GO:0051603_0.517
|
IPR001810+25-73_29-73_31-73+|IPR013320+100-208+|IPR036047+29-116+|IPR043136+101-216+|IPR050672+44-209+
|
SM00256+31-73+
|
PF12937+29-73+F-box-like
|
— |
PTHR12245+44-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-252
|
6dn8_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
28431.270
|
10.343
|
19.500
|
26.984
|
14.683
|
48.413
|
51.587
|
18.651
|
8.333
|
54.365
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
633.169
|
1923.118
|
802.240
|
475.632
|
476.233
|
353.894
|
723.825
|
723.646
|
173.789
|
585.303
|
408.940
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.492
|
-2.153
|
-0.644
|
— |
-0.414
|
1.044
|
0.926
|
— | — | — | — | — | — |
No JSON data available for plots.