Hg_chrom1_TN10mRNA_1695
Organism: Heterodera glycines Gene Locus: chr1:15136499-15138820 Feature type: polypeptideProtein Sequence
Length: 533
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 0.785 | 1.057 | 0.647 | 0.813 | 0.866 | 0.514 | 2.064 | 1.292 | 1.673 | 0.881 | 1.545 | 1.355 | 0.541 | 1.493 | 1.072 | 0.769 | 1.109 | 0.577 | 1.159 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1628
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
30-50
|
0.989
|
— | — | — | — |
0.024
|
— | — |
0.138
|
0.823
|
0.044
|
0.231
|
0.398
|
0.148
|
0.166
|
0.116
|
0.060
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003084
|
2.000
|
1.000
|
Hsc_gene_12735.t1
|
Hsc_gene_11809.t1;Hsc_gene_12735.t1
|
— |
Q9W133.2 AarF domain-containing kinase 1 [Drosophila melanogaster]
|
KAF7623467.1 ABC1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.845|GO:0110165_0.842|GO:0016020_0.806|GO:0005622_0.745|GO:0008150_0.728|GO:0005737_0.693|GO:0043226_0.685|GO:0043229_0.683|GO:0043227_0.657|GO:0043231_0.639|GO:0009987_0.621
|
IPR004147+118-337+|IPR011009+143-338+|IPR045307+117-387+|IPR051130+35-522+
|
— |
PF03109+118-337+ABC1_atypical_kinase-like_domain
|
— |
PTHR43173+35-522+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-533
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
61290.040
|
9.259
|
24.000
|
27.955
|
13.696
|
46.904
|
53.096
|
17.261
|
10.694
|
44.090
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
392.057
|
355.765
|
313.068
|
342.619
|
420.000
|
312.697
|
729.874
|
416.616
|
367.352
|
355.747
|
360.721
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.415
|
-0.191
|
0.240
|
0.261
|
-0.411
|
1.234
|
0.311
|
0.951
|
— | — | — | — | — |
No JSON data available for plots.