Hg_chrom1_TN10mRNA_1697
Organism: Heterodera glycines Gene Locus: chr1:15144020-15146427 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.273 | 0.796 | 0.755 | 1.338 | 1.31 | 0.608 | 1.642 | 1.298 | 1.578 | 0.829 | 1.073 | 1.014 | 0.842 | 1.117 | 0.678 | 1.017 | 0.995 | 0.561 | 1.073 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.290
|
0.392
|
0.016
|
0.690
|
0.230
|
0.173
|
0.230
|
0.099
|
0.289
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006296
|
1.000
|
1.000
|
Hsc_gene_12737.t1
|
Hsc_gene_12737.t1
|
— |
Q8WQA4.2 Chloride intracellular channel exc-4 [Caenorhabditis elegans]
|
KAI3421920.1 Chloride intracellular channel exc-4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.866|GO:0005575_0.862|GO:0110165_0.852|GO:0009987_0.783|GO:0005622_0.780|GO:0016020_0.766|GO:0043226_0.737|GO:0005737_0.712|GO:0043229_0.696|GO:0043227_0.669|GO:0043231_0.632|GO:0071944_0.512|GO:0003674_0.501
|
IPR036282+137-238+|IPR053823+5-85+
|
— |
PF22441+5-85+CLIC-like_N-terminal_domain
|
— |
PTHR43920+3-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-274
|
2yv9_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
31234.760
|
6.580
|
0.500
|
26.642
|
11.314
|
48.175
|
51.825
|
14.234
|
12.409
|
45.255
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
2106.866
|
1666.993
|
1849.732
|
1133.600
|
1270.953
|
2136.461
|
1824.449
|
2918.543
|
3879.090
|
1507.949
|
2524.152
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.694
|
-0.599
|
0.133
|
0.764
|
-0.216
|
0.342
|
-0.532
|
— | — | — | — | — |
No JSON data available for plots.