SCN Proteipedia

Hg_chrom1_TN10mRNA_1698

Organism: Heterodera glycines Gene Locus: chr1:15146558-15148087 Feature type: polypeptide

Protein Sequence

Length: 141

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.237	0.66	1.547	0.0	1.773	1.819	0.844	0.0	1.103	0.863	1.289	2.92	0.197	0.136	2.026	1.317	0.698	0.43	0.0	0.209	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1631	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.605	0.171	0.042	0.430	0.047	0.173	0.097	0.005	0.082	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006297	1.000	1.000	Hsc_gene_12738.t1	Hsc_gene_12738.t1	—	P56812.3 Programmed cell death protein 5 [Mus musculus]	KAH7723656.1 Double-stranded DNA-binding domain containing protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0005575_0.937\|GO:0110165_0.928\|GO:0008150_0.902\|GO:0005622_0.900\|GO:0043226_0.860\|GO:0009987_0.858\|GO:0016020_0.846\|GO:0043229_0.843\|GO:0003674_0.825\|GO:0005488_0.825\|GO:0065007_0.822\|GO:0050789_0.816\|GO:0050794_0.800\|GO:0005737_0.781\|GO:0043227_0.779\|GO:0005515_0.772\|GO:0008152_0.770\|GO:0009058_0.770\|GO:0009059_0.770\|GO:0010467_0.770\|GO:0043170_0.770\|GO:0044237_0.770\|GO:0044249_0.770\|GO:0043231_0.769\|GO:0050896_0.759\|GO:0044238_0.752\|GO:0019222_0.745\|GO:0031323_0.739\|GO:0060255_0.737\|GO:0005634_0.736\|GO:0048518_0.735\|GO:0009889_0.727\|GO:0031326_0.727\|GO:0010556_0.724\|GO:0010468_0.723\|GO:0048519_0.722\|GO:0048522_0.722\|GO:0048523_0.714\|GO:0019538_0.710\|GO:0009893_0.709\|GO:0010604_0.705\|GO:0031325_0.705\|GO:0009891_0.702\|GO:0031328_0.702\|GO:0010557_0.696\|GO:0006457_0.685\|GO:0051604_0.685\|GO:0008219_0.684\|GO:0012501_0.684\|GO:0043067_0.684\|GO:0009719_0.683\|GO:0010628_0.683\|GO:0006915_0.682\|GO:0042981_0.682\|GO:0098772_0.677\|GO:0071495_0.676\|GO:0043068_0.674\|GO:0043065_0.670\|GO:0061077_0.670\|GO:0070848_0.670\|GO:0071363_0.670\|GO:0071559_0.670\|GO:0071560_0.670\|GO:1903332_0.670\|GO:1903333_0.670\|GO:1903644_0.670\|GO:1903645_0.670\|GO:0140677_0.667\|GO:0030234_0.665\|GO:0008092_0.661\|GO:0015631_0.658\|GO:0097367_0.655\|GO:0008047_0.654\|GO:1901681_0.654\|GO:0005539_0.650\|GO:0008201_0.650\|GO:0010698_0.650\|GO:0048487_0.650\|GO:0005576_0.568\|GO:0005615_0.567\|GO:0031982_0.565\|GO:0043230_0.560\|GO:0065010_0.558\|GO:0070062_0.558\|GO:1903561_0.558	IPR002836+4-128_11-123_15-116+\|IPR036883+16-107_33-116+	—	PF01984+15-116+Double-stranded_DNA-binding_domain	—	PTHR10840+11-123+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-141	0.000	—	1eij_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.562	15706.490	5.439	-1.000	37.589	1.418	60.993	39.007	18.440	19.149	46.099

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	1338.920	2244.915	1260.497	1075.041	1031.468	895.684	1126.462	1360.888	1171.380	1606.134	1419.811

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.062	-1.199	-0.121	—	-0.189	0.343	0.498	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser