Hg_chrom1_TN10mRNA_17
Organism: Heterodera glycines Gene Locus: chr1:193327-194764 Feature type: polypeptideProtein Sequence
Length: 81
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.431 | 0.287 | 0.224 | 0.0 | 0.412 | 0.0 | 0.882 | 1.852 | 1.372 | 2.169 | 0.748 | 2.179 | 3.086 | 0.95 | 0.252 | 1.058 | 1.619 | 1.684 | 1.899 | 0.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_17
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.103
|
0.127
|
0.082
|
0.814
|
0.452
|
0.710
|
0.031
|
0.346
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005556
|
1.000
|
1.000
|
Hsc_gene_14948.t1
|
Hsc_gene_14948.t1
|
— |
P61165.1 Transmembrane protein 258 [Homo sapiens]
|
KAI1711778.1 oligosaccharyltransferase subunit 5 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006487|GO:0034998
|
GO:0008150_0.928|GO:0009987_0.863|GO:0005575_0.741|GO:0110165_0.737|GO:0016020_0.685|GO:0005886_0.645|GO:0071944_0.645|GO:0005622_0.568|GO:0005737_0.568|GO:0043226_0.541|GO:0043229_0.526|GO:0043227_0.525|GO:0005773_0.521|GO:0043231_0.521|GO:0031090_0.520|GO:0008152_0.514|GO:0009058_0.513|GO:0044237_0.513|GO:0019538_0.508|GO:0043170_0.508|GO:0044238_0.508|GO:0044249_0.506|GO:0009059_0.503
|
IPR007915+7-81_9-81+
|
— |
PF05251+9-81+Oligosaccharyltransferase_subunit_5
|
— |
PTHR13636+7-81+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-81
|
9ygy_L2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
9043.900
|
10.007
|
3.500
|
13.580
|
18.519
|
32.099
|
67.901
|
9.877
|
3.704
|
46.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
sienna3
|
1318.366
|
245.377
|
435.012
|
911.638
|
1189.431
|
1093.671
|
954.534
|
523.531
|
3630.351
|
1037.639
|
2148.801
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
1.756
|
1.176
|
0.351
|
— |
-0.187
|
-1.165
|
1.007
|
1.687
|
— | — | — | — |
No JSON data available for plots.