Hg_chrom1_TN10mRNA_170
Organism: Heterodera glycines Gene Locus: chr1:1205744-1210428 Feature type: polypeptideProtein Sequence
Length: 329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.272 | 0.718 | 0.838 | 1.216 | 0.779 | 0.398 | 2.584 | 0.946 | 1.602 | 0.507 | 0.715 | 1.942 | 1.052 | 1.303 | 1.129 | 0.897 | 0.875 | 1.169 | 0.894 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_165
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.518
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRRNFAVDEYRKKAF
|
— | — |
51-79
|
0.984
|
— | — |
0.037
|
— | — |
0.336
|
0.288
|
0.085
|
0.427
|
0.443
|
0.241
|
0.311
|
0.021
|
0.118
|
0.412
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002884
|
1.000
|
2.000
|
Hsc_gene_25930.t1;Hsc_gene_25930.t2
|
— | — |
P34548.1 Xylosylprotein 4-beta-galactosyltransferase [Caenorhabditis elegans]
|
KJH43761.1 N-acetyllactosaminide 3-alpha-galactosyltransferase [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.950|GO:0009987_0.825|GO:0003674_0.796|GO:0008152_0.716|GO:0043170_0.698|GO:0044237_0.691|GO:0009058_0.688|GO:0005575_0.682|GO:0044249_0.676|GO:0110165_0.673|GO:0003824_0.671|GO:0009059_0.668|GO:0044238_0.634|GO:0016740_0.629|GO:1901135_0.627|GO:1901137_0.615|GO:0016757_0.596|GO:0016758_0.595|GO:0019538_0.546|GO:0016020_0.537|GO:0008378_0.528|GO:0008194_0.507
|
IPR027791+243-273+|IPR029044+123-314_245-280+
|
— |
PF02709+243-273+N-terminal_domain_of_galactosyltransferase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
38029.270
|
6.844
|
3.500
|
26.140
|
16.717
|
48.024
|
51.976
|
14.894
|
11.246
|
45.897
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
344.069
|
53.110
|
44.383
|
180.337
|
65.740
|
57.723
|
36.888
|
51.445
|
110.302
|
1238.967
|
755.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.487
|
1.627
|
2.129
|
-1.489
|
— |
-0.640
|
— | — |
-3.597
|
— | — | — | — |
No JSON data available for plots.