Hg_chrom1_TN10mRNA_1701
Organism: Heterodera glycines Gene Locus: chr1:15153721-15154463 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 1.319 | 0.469 | 1.244 | 0.945 | 0.925 | 1.105 | 1.804 | 0.802 | 1.184 | 0.234 | 1.213 | 2.005 | 1.289 | 1.473 | 0.663 | 0.592 | 1.172 | 1.983 | 0.91 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1634
|
— | — |
1.444
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.476
|
0.338
|
0.017
|
0.579
|
0.210
|
0.183
|
0.185
|
0.006
|
0.185
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001729
|
3.000
|
1.000
|
Hsc_gene_12760.t1
|
— | — |
A8QGZ7.1 F-box/SPRY domain-containing protein 1 [Brugia malayi]
|
KAI1716573.1 SPRY domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.932|GO:0005575_0.807|GO:0110165_0.807|GO:0008152_0.803|GO:0044238_0.770|GO:0043170_0.734|GO:0019538_0.728|GO:0009056_0.706|GO:0005622_0.693|GO:0009057_0.687|GO:0030163_0.677|GO:0009987_0.638|GO:0005737_0.605|GO:0003674_0.585|GO:0065007_0.557|GO:0050789_0.547|GO:0006508_0.527|GO:0051603_0.520|GO:0006511_0.516|GO:0019941_0.516|GO:0043632_0.516
|
IPR001870+1-192+|IPR003877+43-192_94-186+|IPR013320+12-191+|IPR043136+11-187+|IPR050672+12-189+
|
SM00449+43-192+
|
PF00622+94-186+SPRY_domain
|
— |
PTHR12245+12-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
21893.070
|
7.647
|
4.500
|
20.619
|
16.495
|
38.144
|
61.856
|
12.371
|
8.247
|
51.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
152.642
|
212.165
|
130.270
|
109.032
|
86.719
|
61.188
|
120.307
|
104.267
|
13.823
|
348.462
|
205.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.933
|
-1.098
|
— |
-0.360
|
— |
0.987
|
0.668
|
0.350
|
-4.828
|
— | — | — | — |
No JSON data available for plots.