Hg_chrom1_TN10mRNA_1704
Organism: Heterodera glycines Gene Locus: chr1:15159401-15162248 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.372 | 0.582 | 0.414 | 0.8 | 0.821 | 0.524 | 1.4 | 0.8 | 2.757 | 1.091 | 0.706 | 2.0 | 0.615 | 0.49 | 1.429 | 0.328 | 1.212 | 0.615 | 1.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1636
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.855
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
9-29
|
0.944
|
— | — | — | — |
0.001
|
— | — |
0.164
|
0.205
|
0.014
|
0.165
|
0.894
|
0.490
|
0.558
|
0.053
|
0.185
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006300
|
1.000
|
1.000
|
Hsc_gene_12758.t2
|
Hsc_gene_12758.t1;Hsc_gene_12758.t2
|
— |
Q6IFY7.1 Reticulon-1-A [Xenopus laevis]
|
KAF7638422.1 Reticulon-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.927|GO:0110165_0.927|GO:0016020_0.816|GO:0005622_0.771|GO:0005737_0.771|GO:0071944_0.765|GO:0005886_0.763|GO:0043226_0.734|GO:0008150_0.731|GO:0043229_0.717|GO:0043227_0.707|GO:0043231_0.690|GO:0005773_0.670|GO:0012505_0.657|GO:0009987_0.637|GO:0005783_0.562
|
IPR003388+56-250_58-221+|IPR046964+49-248+
|
— |
PF02453+58-221+Reticulon
|
— |
PTHR45799+49-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
28137.310
|
8.895
|
7.500
|
20.400
|
15.600
|
37.200
|
62.800
|
12.400
|
8.000
|
41.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
4359.273
|
4803.573
|
3499.756
|
5664.780
|
7624.842
|
7250.607
|
6645.437
|
6238.749
|
1391.657
|
2380.173
|
1956.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.685
|
0.101
|
0.802
|
0.397
|
— | — | — |
0.233
|
— |
2.206
|
— | — | — |
No JSON data available for plots.