SCN Proteipedia

Hg_chrom1_TN10mRNA_1706

Organism: Heterodera glycines Gene Locus: chr1:15171068-15172344 Feature type: polypeptide

Protein Sequence

Length: 246

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.567	1.418	1.33	0.701	1.152	1.355	0.29	0.407	2.439	1.209	0.801	0.956	1.242	1.094	0.913	1.394	0.733	0.739	1.251	0.598	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1638	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.931

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.466	0.153	0.031	0.487	0.236	0.195	0.142	0.199	0.075	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000512	7.000	0.000	0.000	—	—	—	KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.939\|GO:0005575_0.926\|GO:0110165_0.916\|GO:0009987_0.878\|GO:0005622_0.873\|GO:0065007_0.829\|GO:0050789_0.815\|GO:0050794_0.808\|GO:0050896_0.791\|GO:0051716_0.774\|GO:0032502_0.735\|GO:0048856_0.735\|GO:0032501_0.734\|GO:0023052_0.728\|GO:0048519_0.727\|GO:0007154_0.726\|GO:0007165_0.718\|GO:0048523_0.715\|GO:0007275_0.710\|GO:0030154_0.704\|GO:0048869_0.704\|GO:0048583_0.701\|GO:0010646_0.699\|GO:0023051_0.699\|GO:0051239_0.693\|GO:0009966_0.692\|GO:0035556_0.691\|GO:1902531_0.689\|GO:0050793_0.686\|GO:0048513_0.685\|GO:0141124_0.685\|GO:0048585_0.682\|GO:0009791_0.681\|GO:0023057_0.681\|GO:0009968_0.680\|GO:0010648_0.680\|GO:2000026_0.680\|GO:0051241_0.677\|GO:0051093_0.676\|GO:1902532_0.676\|GO:0007264_0.675\|GO:0001708_0.670\|GO:0002119_0.670\|GO:0002164_0.670\|GO:0007265_0.670\|GO:0010453_0.670\|GO:0040025_0.670\|GO:0040027_0.670\|GO:0040028_0.670\|GO:0042659_0.670\|GO:0045165_0.670\|GO:0046578_0.670\|GO:0046580_0.670\|GO:0048580_0.670\|GO:0048581_0.670\|GO:0051056_0.670\|GO:0051058_0.670\|GO:0061062_0.670\|GO:0061064_0.670	IPR012337+12-152+	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-246	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.552	28031.900	4.470	-10.000	24.797	8.943	50.407	49.593	10.569	14.228	47.561

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	278.401	554.722	624.506	482.991	338.101	307.524	118.885	695.274	18.857	33.111	27.002

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.337	-0.261	-0.547	—	-1.365	1.074	-2.410	—	—	—	—	—

No JSON data available for plots.

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