Hg_chrom1_TN10mRNA_1709
Organism: Heterodera glycines Gene Locus: chr1:15181857-15186151 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.643 | 1.029 | 0.965 | 1.602 | 1.18 | 1.248 | 0.658 | 0.774 | 1.082 | 1.315 | 0.67 | 0.651 | 1.721 | 1.106 | 1.806 | 1.043 | 0.834 | 0.67 | 0.34 | 0.846 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1640
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRTINLPGRRELEQKARQK
|
21-53
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.360
|
0.104
|
0.080
|
0.336
|
0.323
|
0.216
|
0.188
|
0.014
|
0.114
|
0.497
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006302
|
1.000
|
1.000
|
Hsc_gene_12754.t1
|
Hsc_gene_12754.t1
|
— |
Q17944.3 Protein dyf-4 [Caenorhabditis elegans]
|
KAH7713473.1 Protein C13C12.2 [Aphelenchus avenae]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-405
|
2.000
|
1-359;406-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
51598.770
|
7.812
|
7.500
|
27.212
|
11.062
|
48.894
|
51.106
|
14.823
|
12.389
|
48.009
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
286.644
|
208.156
|
65.226
|
86.626
|
778.357
|
1079.710
|
132.171
|
167.765
|
10.863
|
301.667
|
177.037
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.901
|
-1.402
|
0.516
|
3.136
|
0.489
|
-3.022
|
-2.801
|
— |
-4.919
|
— | — | — | — |
No JSON data available for plots.