Hg_chrom1_TN10mRNA_171
Organism: Heterodera glycines Gene Locus: chr1:1211550-1213697 Feature type: polypeptideProtein Sequence
Length: 572
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 1.87 | 0.668 | 0.543 | 0.554 | 2.69 | 0.687 | 2.185 | 0.894 | 1.229 | 0.079 | 1.748 | 1.457 | 1.883 | 1.391 | 1.024 | 0.946 | 0.662 | 0.403 | 0.257 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_166
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRNNANAGRGRGRGGGTRRRA
|
— | — |
31-122
|
0.948
|
— | — |
0.000
|
— | — |
0.605
|
0.165
|
0.001
|
0.760
|
0.105
|
0.021
|
0.070
|
0.096
|
0.049
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001036
|
2.000
|
3.000
|
Hsc_gene_25820.t1;Hsc_gene_3971.t1;Hsc_gene_3972.t1
|
— | — | — |
XP_056865579.1 E3 ubiquitin-protein ligase RING1-like isoform X2 [Raphanus sativus]
|
KAF9614614
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.967|GO:0003674_0.866|GO:0008152_0.712|GO:0044238_0.710|GO:0003824_0.700|GO:0140096_0.700|GO:0016740_0.679|GO:0016746_0.675|GO:0016755_0.675|GO:0019787_0.675|GO:0004842_0.673|GO:0050896_0.666|GO:0043170_0.633|GO:0009987_0.631|GO:0005575_0.604|GO:0110165_0.595|GO:0042221_0.562|GO:0065007_0.553|GO:0019538_0.550|GO:0050789_0.549|GO:0005622_0.536|GO:0050794_0.534|GO:1901700_0.527|GO:0016020_0.525|GO:0036211_0.521|GO:0043412_0.521
|
IPR001841+520-562_521-562+|IPR013083+507-571+|IPR051834+297-562+
|
SM00184+521-562+
|
PF13639+520-562+Ring_finger_domain
|
— |
PTHR45931+297-562+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;278-494
|
2.000
|
18-277;495-572
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
64145.100
|
7.967
|
14.500
|
18.706
|
11.014
|
50.175
|
49.825
|
11.713
|
6.993
|
51.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
110.928
|
3.305
|
10.728
|
5.016
|
3.158
|
2.651
|
3.439
|
14.272
|
91.396
|
400.799
|
268.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.463
|
— |
-0.984
|
— | — | — |
2.330
|
-1.913
|
— | — |
-6.758
|
— | — |
No JSON data available for plots.