Hg_chrom1_TN10mRNA_1712
Organism: Heterodera glycines Gene Locus: chr1:15193469-15194929 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 0.719 | 0.656 | 0.355 | 0.43 | 0.793 | 1.902 | 0.258 | 1.489 | 1.045 | 0.547 | 1.819 | 1.289 | 0.595 | 0.842 | 1.988 | 0.507 | 1.64 | 0.0 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1643
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|endoplasmic_reticulum
|
— | — | — | — |
23-74
|
0.989
|
— | — |
0.000
|
— | — |
0.127
|
0.664
|
0.546
|
0.105
|
0.635
|
0.422
|
0.333
|
0.250
|
0.107
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006305
|
1.000
|
1.000
|
Hsc_gene_12746.t1
|
Hsc_gene_12746.t1;Hsc_gene_12750.t1
|
— | — |
XP_033761243.1 FUN14 domain-containing protein 1-like isoform X1 [Pecten maximus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.911|GO:0009987_0.823|GO:0008152_0.746|GO:0044237_0.727|GO:0009056_0.693|GO:0044248_0.682|GO:0000422_0.670|GO:0000423_0.670|GO:0006914_0.670|GO:0016236_0.670|GO:0061919_0.670
|
IPR007014+68-192_80-191+
|
— |
PF04930+80-191+FUN14_family
|
— |
PTHR21346+68-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
19547.410
|
9.171
|
3.500
|
14.433
|
6.186
|
37.629
|
62.371
|
8.247
|
6.186
|
62.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1085.671
|
561.831
|
673.019
|
878.911
|
1199.825
|
1381.864
|
1852.436
|
1099.315
|
486.389
|
1517.320
|
1075.493
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.509
|
0.494
|
0.418
|
0.218
|
0.434
|
-0.437
|
0.897
|
— | — | — | — | — |
No JSON data available for plots.