Hg_chrom1_TN10mRNA_1714
Organism: Heterodera glycines Gene Locus: chr1:15196632-15202729 Feature type: polypeptideProtein Sequence
Length: 1,214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 0.958 | 1.108 | 0.824 | 1.181 | 0.824 | 0.824 | 1.194 | 1.428 | 1.514 | 0.499 | 0.969 | 1.144 | 0.808 | 1.126 | 1.153 | 1.134 | 1.048 | 0.507 | 0.678 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1645
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.522
|
0.082
|
0.028
|
0.492
|
0.296
|
0.399
|
0.218
|
0.016
|
0.233
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006306
|
1.000
|
1.000
|
Hsc_gene_12743.t1
|
Hsc_gene_12743.t1
|
— |
Q16531.1 DNA damage-binding protein 1 [Homo sapiens]
|
KAI3422469.1 DNA damage-binding protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005515|GO:0005634
|
GO:0005575_0.782|GO:0110165_0.715|GO:0008150_0.685|GO:0016020_0.635|GO:0005622_0.624|GO:0043226_0.558|GO:0009987_0.549|GO:0043229_0.541|GO:0043227_0.521|GO:0043231_0.504
|
IPR004871+820-1168+|IPR015943+7-1062_16-353_390-711+|IPR018846+78-541+|IPR050358+6-1210+
|
— |
PF03178+820-1168+CPSF_A_subunit_region|PF10433+78-541+Mono-functional_DNA-alkylating_methyl_methanesulfonate_N-term
|
— |
PTHR10644+6-1210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1214
|
2b5n_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
133872.030
|
4.759
|
-38.500
|
24.382
|
9.473
|
46.705
|
53.295
|
11.203
|
13.180
|
52.142
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
1546.569
|
2578.153
|
1513.678
|
1827.101
|
2403.554
|
1651.968
|
2700.930
|
1065.033
|
990.757
|
870.516
|
922.048
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.998
|
-0.634
|
0.380
|
0.364
|
-0.527
|
0.720
|
-0.739
|
1.486
|
— | — | — | — | — |
No JSON data available for plots.