SCN Proteipedia

Hg_chrom1_TN10mRNA_1715

Organism: Heterodera glycines Gene Locus: chr1:15202913-15203957 Feature type: polypeptide

Protein Sequence

Length: 162

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.22	1.005	0.786	0.213	1.337	1.583	0.588	1.235	0.549	1.001	1.871	1.452	0.171	0.712	1.386	0.529	1.619	1.122	0.475	0.363	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1646	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.980

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.488	0.357	0.016	0.614	0.065	0.102	0.179	0.002	0.115	0.141

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006307	1.000	1.000	Hsc_gene_12742.t1	Hsc_gene_12742.t1	—	O60869.1 Endothelial differentiation-related factor 1 [Homo sapiens]	KAF7638424.1 HTH cro/C1-type domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0005575_0.935\|GO:0110165_0.931\|GO:0005622_0.826\|GO:0008150_0.815\|GO:0009987_0.780\|GO:0043226_0.778\|GO:0016020_0.770\|GO:0043229_0.763\|GO:0043227_0.711\|GO:0043231_0.688\|GO:0008152_0.678\|GO:0009058_0.672\|GO:0044238_0.672\|GO:0044237_0.671\|GO:0043170_0.669\|GO:0009059_0.662\|GO:0010467_0.662\|GO:0044249_0.662\|GO:0005737_0.661\|GO:0003674_0.656\|GO:0005488_0.653\|GO:0065007_0.630\|GO:0050789_0.621\|GO:0050794_0.606\|GO:0043228_0.602\|GO:0005515_0.596\|GO:0043232_0.596\|GO:0006139_0.571\|GO:0019222_0.557\|GO:0031323_0.557\|GO:0034654_0.555\|GO:0048518_0.554\|GO:0090304_0.551\|GO:0048522_0.550\|GO:0080090_0.549\|GO:0060255_0.548\|GO:0016070_0.546\|GO:0141187_0.546\|GO:0032774_0.543\|GO:0009889_0.541\|GO:0031326_0.541\|GO:0005634_0.539\|GO:0010556_0.537\|GO:0010468_0.536\|GO:0009893_0.531\|GO:0010604_0.530\|GO:0019219_0.529\|GO:0031325_0.529\|GO:0009891_0.528\|GO:0006351_0.525\|GO:0051252_0.525\|GO:0006355_0.523\|GO:2001141_0.523\|GO:0010557_0.522\|GO:0031328_0.522\|GO:0045935_0.516\|GO:0051254_0.514\|GO:0045893_0.512\|GO:1902680_0.512\|GO:0031974_0.507\|GO:0043233_0.507\|GO:0070013_0.507	IPR001387+85-139_87-142_88-140_88-144+\|IPR010982+72-160_83-139+\|IPR013729+12-80+	SM00530+87-142+	PF01381+88-140+Helix-turn-helix\|PF08523+12-80+Multiprotein_bridging_factor_1	G3DSA:1.10.260.40:FF:000018+72-145+Multiprotein_bridging_factor_1	PTHR10245+8-149+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-162	0.000	—	7o81_AU	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.562	18087.680	10.568	13.000	33.951	4.938	58.025	41.975	21.605	12.346	49.383

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2409.197	2371.216	1979.244	1908.464	2084.746	2511.042	2277.206	2420.611	2628.052	2737.000	2690.308

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.489	-0.450	—	0.096	0.283	—	—	—	—	—	—	—	—

No JSON data available for plots.

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