SCN Proteipedia

Hg_chrom1_TN10mRNA_1716

Organism: Heterodera glycines Gene Locus: chr1:15204121-15206076 Feature type: polypeptide

Protein Sequence

Length: 516

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.428	0.856	0.951	0.668	1.421	1.044	0.738	1.744	1.163	1.336	0.734	1.026	1.238	0.857	1.622	1.107	0.667	1.057	1.491	1.14	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1647	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.869

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.004	—	—	0.838	0.100	0.012	0.424	0.078	0.032	0.065	0.007	0.046	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006308	1.000	1.000	Hsc_gene_12741.t1	Hsc_gene_12741.t1	—	Q9H7Z6.2 Histone acetyltransferase KAT8 [Homo sapiens]	KAF7638423.1 Histone acetyltransferase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004402\|GO:0006355	GO:0008150_0.947\|GO:0009987_0.894\|GO:0003674_0.794\|GO:0005575_0.790\|GO:0110165_0.781\|GO:0065007_0.759\|GO:0008152_0.752\|GO:0050789_0.744\|GO:0005622_0.735\|GO:0043170_0.696\|GO:0003824_0.670\|GO:0050794_0.666\|GO:0043226_0.658\|GO:0043229_0.649\|GO:0071840_0.649\|GO:0009058_0.642\|GO:0016043_0.641\|GO:0016020_0.631\|GO:0044237_0.628\|GO:0016740_0.620\|GO:0019222_0.607\|GO:0140096_0.598\|GO:0044249_0.597\|GO:0009059_0.592\|GO:0009889_0.582\|GO:0010467_0.575\|GO:0006325_0.571\|GO:0006338_0.571\|GO:0031323_0.571\|GO:0060255_0.569\|GO:0016746_0.563\|GO:0044238_0.558\|GO:0043227_0.556\|GO:0010556_0.554\|GO:0031326_0.554\|GO:0016747_0.552\|GO:0010468_0.550\|GO:0004402_0.547\|GO:0008080_0.547\|GO:0016407_0.547\|GO:0016410_0.547\|GO:0034212_0.547\|GO:0061733_0.547\|GO:0140993_0.547\|GO:0043231_0.544	IPR002717+216-493_280-457+\|IPR016181+219-491+\|IPR016197+38-217+\|IPR025995+133-158+\|IPR036388+397-481+\|IPR040706+218-271+\|IPR050603+72-502+	—	PF01853+280-457+MOZ/SAS_family\|PF11717+133-158+RNA_binding_activity-knot_of_a_chromodomain\|PF17772+218-271+MYST_family_zinc_finger_domain	G3DSA:1.10.10.10:FF:000022+397-479+Histone_acetyltransferase\|G3DSA:3.30.60.60:FF:000001+215-274+Histone_acetyltransferase\|G3DSA:3.40.630.30:FF:000002+278-406+Histone_acetyltransferase	PTHR10615+72-502+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	66-205	2.000	1-65;206-516	7cmr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.628	59876.010	6.875	4.000	30.039	13.760	49.612	50.388	16.279	13.760	43.992

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	1878.846	1604.880	1126.530	994.468	1198.947	849.975	1511.328	999.617	1273.614	4157.586	2921.598

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.741	-0.828	—	0.238	-0.482	0.842	—	0.739	-1.801	—	—	—	—

No JSON data available for plots.

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