SCN Proteipedia

Hg_chrom1_TN10mRNA_1717

Organism: Heterodera glycines Gene Locus: chr1:15206152-15211800 Feature type: polypeptide

Protein Sequence

Length: 697

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.817	1.034	0.887	0.792	1.196	0.809	1.144	1.65	1.275	1.221	0.891	1.182	1.116	1.242	0.996	0.656	0.776	1.109	1.104	0.591	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1648	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.879

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.117	0.900	0.010	0.210	0.115	0.139	0.139	0.038	0.090	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003085	2.000	1.000	Hsc_gene_12759.t1	Hsc_gene_12740.t1;Hsc_gene_12759.t1	—	Q11190.2 Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Caenorhabditis elegans]	KAI1712179.1 electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0003723\|GO:0004174\|GO:0005688\|GO:0022900\|GO:0046540\|GO:0051536	GO:0005575_0.883\|GO:0110165_0.879\|GO:0016020_0.789\|GO:0005622_0.777\|GO:0005737_0.735\|GO:0043226_0.720\|GO:0043229_0.718\|GO:0043227_0.686\|GO:0008150_0.676\|GO:0043231_0.674\|GO:0003674_0.548\|GO:0009987_0.518	IPR001163+603-672_605-671+\|IPR006076+55-101+\|IPR007859+496-601+\|IPR010920+605-679+\|IPR034103+602-692+\|IPR036188+29-497_52-426+\|IPR040156+23-600+\|IPR047575+600-676+\|IPR049398+247-343+	SM00651+603-672+	PF01266+55-101+FAD_dependent_oxidoreductase\|PF01423+605-671+LSM_domain\|PF05187+496-601+Electron_transfer_flavoprotein-ubiquinone_oxidoreductase,_4Fe-4S\|PF21162+247-343+ETF-QO,_ubiquinone-binding	G3DSA:2.30.30.100:FF:000022+602-695+U6_snRNA-associated_Sm-like_protein_LSm8\|G3DSA:3.30.70.20:FF:000012+501-600+Electron_transfer_flavoprotein-ubiquinone_oxidoreductase,_mitochondrial	PTHR10617+23-600+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	461-529	2.000	1-460;530-697	8rm5_68	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.709	76726.850	6.677	2.500	26.112	10.760	43.042	56.958	14.060	12.052	51.363

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	3815.459	5651.209	6505.333	5224.479	4157.552	3709.362	2980.532	5237.357	761.955	3571.485	2367.401

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.250	-0.208	-0.361	—	-0.307	0.390	-0.671	-2.340	2.949	—	—	—

No JSON data available for plots.

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