Hg_chrom1_TN10mRNA_1718
Organism: Heterodera glycines Gene Locus: chr1:15211905-15213132 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.088 | 0.785 | 0.868 | 0.779 | 0.646 | 0.985 | 2.338 | 0.959 | 1.118 | 0.382 | 0.846 | 1.399 | 1.314 | 1.542 | 0.976 | 0.649 | 1.308 | 1.937 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1649
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.760
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
26-46
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.563
|
0.126
|
0.004
|
0.443
|
0.110
|
0.181
|
0.168
|
0.003
|
0.205
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001729
|
3.000
|
1.000
|
Hsc_gene_12760.t1
|
Hsc_gene_12760.t1;Hsc_gene_25080.t1
|
— |
A8XT88.1 F-box/SPRY domain-containing protein 1 [Caenorhabditis briggsae]
|
KAI1716573.1 SPRY domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.933|GO:0008152_0.810|GO:0005575_0.805|GO:0110165_0.802|GO:0044238_0.777|GO:0043170_0.732|GO:0019538_0.716|GO:0009056_0.704|GO:0005622_0.685|GO:0009057_0.685|GO:0030163_0.676|GO:0009987_0.642|GO:0003674_0.590|GO:0005737_0.581|GO:0065007_0.544|GO:0050789_0.529|GO:0006508_0.526|GO:0006511_0.517|GO:0019941_0.517|GO:0043632_0.517|GO:0051603_0.517
|
IPR001810+25-73_29-73_31-73+|IPR001870+84-276+|IPR003877+144-276_147-270+|IPR013320+100-275+|IPR036047+29-116+|IPR043136+101-276+|IPR050672+47-273+
|
SM00256+31-73+|SM00449+144-276+
|
PF00622+147-270+SPRY_domain|PF12937+29-73+F-box-like
|
— |
PTHR12245+47-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-278
|
2v24_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
30998.320
|
8.196
|
9.500
|
23.741
|
14.748
|
41.727
|
58.273
|
14.748
|
8.993
|
53.957
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
458.161
|
509.502
|
475.292
|
365.380
|
380.638
|
350.504
|
669.241
|
488.093
|
34.237
|
764.282
|
451.406
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.330
|
-0.617
|
-0.270
|
— | — |
0.945
|
0.372
|
0.600
|
-4.598
|
— | — | — | — |
No JSON data available for plots.