Hg_chrom1_TN10mRNA_1719
Organism: Heterodera glycines Gene Locus: chr1:15216069-15218674 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 0.746 | 1.239 | 0.76 | 1.002 | 0.719 | 0.382 | 2.405 | 1.113 | 1.408 | 1.093 | 2.004 | 1.614 | 0.54 | 1.554 | 0.945 | 0.657 | 1.123 | 0.617 | 1.061 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1650
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.214
|
0.463
|
0.037
|
0.315
|
0.850
|
0.171
|
0.389
|
0.106
|
0.209
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003084
|
2.000
|
1.000
|
Hsc_gene_12735.t1
|
Hsc_gene_11809.t1;Hsc_gene_12735.t1
|
— |
Q9W133.2 AarF domain-containing kinase 1 [Drosophila melanogaster]
|
KAF7623467.1 ABC1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.844|GO:0110165_0.841|GO:0016020_0.800|GO:0005622_0.753|GO:0008150_0.733|GO:0005737_0.689|GO:0043226_0.687|GO:0043229_0.682|GO:0043227_0.659|GO:0043231_0.640|GO:0009987_0.628
|
IPR000719+131-427+|IPR004147+103-347+|IPR011009+126-325+|IPR045307+102-353+|IPR051130+102-488+
|
SM00220+131-427+
|
PF03109+103-347+ABC1_atypical_kinase-like_domain
|
— |
PTHR43173+102-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
58332.480
|
8.870
|
22.000
|
32.465
|
15.030
|
49.098
|
50.902
|
19.639
|
12.826
|
42.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
465.509
|
642.895
|
562.366
|
496.704
|
557.121
|
700.197
|
654.120
|
796.842
|
51.290
|
344.293
|
218.720
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.422
|
-0.509
|
— |
0.133
|
0.345
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.