Hg_chrom1_TN10mRNA_172
Organism: Heterodera glycines Gene Locus: chr1:1217432-1219562 Feature type: polypeptideProtein Sequence
Length: 511
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.001 | 1.103 | 0.81 | 1.011 | 1.004 | 0.722 | 1.761 | 1.087 | 1.164 | 0.623 | 1.151 | 1.142 | 1.054 | 1.717 | 0.727 | 0.802 | 1.186 | 1.204 | 1.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_167
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.844
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.771
|
0.517
|
0.053
|
0.515
|
0.163
|
0.090
|
0.046
|
0.037
|
0.091
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000492
|
5.000
|
2.000
|
Hsc_gene_15604.t1;Hsc_gene_8471.t1
|
Hsc_gene_16129.t1;Hsc_gene_3973.t1
|
— | — |
CAD2145742.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+22-183+|IPR006172+25-38_222-234_323-331+|IPR023211+279-393+|IPR043502+21-379+
|
— |
PF03175+22-183+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+14-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-511
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
58840.010
|
7.810
|
11.000
|
28.180
|
13.894
|
46.380
|
53.620
|
16.047
|
12.133
|
48.141
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkmagenta
|
1226.390
|
17.068
|
47.447
|
20.838
|
10.631
|
9.500
|
3.853
|
7.769
|
309.780
|
5089.207
|
3040.881
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.242
|
— |
-1.076
|
-0.997
|
— |
-1.294
|
— | — | — | — |
-8.366
|
5.772
|
— |
No JSON data available for plots.