Hg_chrom1_TN10mRNA_1720
Organism: Heterodera glycines Gene Locus: chr1:15220164-15222063 Feature type: polypeptideProtein Sequence
Length: 410
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.51 | 0.681 | 0.887 | 0.589 | 0.854 | 1.063 | 0.9 | 1.341 | 0.976 | 0.923 | 1.109 | 2.152 | 1.287 | 1.36 | 1.593 | 0.941 | 0.92 | 1.146 | 1.876 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1651
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKR,KRTERDRSRAKTAKVKK.
|
1-29
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.119
|
0.959
|
0.059
|
0.124
|
0.046
|
0.038
|
0.057
|
0.006
|
0.027
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006309
|
1.000
|
1.000
|
Hsc_gene_12761.t1
|
Hsc_gene_11808.t1;Hsc_gene_12761.t1
|
— |
P49404.3 Large ribosomal subunit protein uL3m [Caenorhabditis elegans]
|
KAI1716572.1 ribosomal protein l3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.843|GO:0110165_0.832|GO:0005622_0.770|GO:0043226_0.730|GO:0043229_0.716|GO:0016020_0.701|GO:0005737_0.695|GO:0043227_0.642|GO:0043231_0.623|GO:0003674_0.580|GO:0008150_0.510
|
IPR000597+222-306+|IPR009000+99-349+|IPR019927+91-393+
|
— |
PF00297+222-306+Ribosomal_protein_L3
|
— |
PTHR11229+91-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
381-410
|
1.000
|
1-380
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
46893.120
|
10.245
|
26.500
|
27.805
|
12.439
|
47.073
|
52.927
|
17.805
|
10.000
|
48.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1850.130
|
1869.322
|
1631.958
|
2016.315
|
2289.588
|
1600.248
|
2050.490
|
1699.654
|
1761.543
|
1839.071
|
1805.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.426
|
— |
0.414
|
0.151
|
-0.502
|
0.369
|
— |
0.414
|
— | — | — | — | — |
No JSON data available for plots.