SCN Proteipedia

Hg_chrom1_TN10mRNA_1723

Organism: Heterodera glycines Gene Locus: chr1:15226766-15228510 Feature type: polypeptide

Protein Sequence

Length: 348

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.769	0.936	0.836	1.288	1.293	1.326	1.197	1.437	1.277	0.582	0.392	1.014	1.596	0.995	1.759	1.232	0.377	1.132	0.663	0.592	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1654	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	—	—	—	4-38	0.998	—	—	0.000	—	—	0.184	0.183	0.023	0.211	0.394	0.166	0.249	0.021	0.136	0.809

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006312	1.000	1.000	Hsc_gene_12764.t1	Hsc_gene_12764.t1	—	Q21241.3 Leukocyte cell-derived chemotaxin-2 homolog [Caenorhabditis elegans]	KAI1703499.1 peptidase family m23 domain-containing protein [Ditylenchus destructor]	No	0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.938\|GO:0005575_0.887\|GO:0110165_0.884\|GO:0009987_0.869\|GO:0065007_0.828\|GO:0050789_0.823\|GO:0050794_0.795\|GO:0016020_0.780\|GO:0032501_0.771\|GO:0032502_0.763\|GO:0048856_0.763\|GO:0007275_0.742\|GO:0048731_0.734\|GO:0071840_0.728\|GO:0016043_0.723\|GO:0048869_0.720\|GO:0030154_0.715\|GO:0048468_0.707\|GO:0007399_0.697\|GO:0022008_0.694\|GO:0040007_0.693\|GO:0009653_0.692\|GO:0050793_0.691\|GO:0048699_0.689\|GO:0030182_0.688\|GO:0048589_0.686\|GO:0051128_0.686\|GO:0048666_0.684\|GO:0030030_0.682\|GO:0120036_0.680\|GO:0040008_0.679\|GO:0031175_0.678\|GO:0000902_0.677\|GO:0022603_0.677\|GO:0031344_0.677\|GO:0120035_0.677\|GO:0016049_0.676\|GO:0010975_0.675\|GO:0048638_0.675\|GO:0001558_0.674\|GO:0048667_0.674\|GO:0048812_0.674\|GO:0048858_0.674\|GO:0060560_0.674\|GO:0120039_0.674\|GO:0071944_0.671\|GO:0016358_0.670\|GO:0021675_0.670\|GO:0022604_0.670\|GO:0048588_0.670\|GO:0048813_0.670\|GO:0048814_0.670\|GO:0050773_0.670\|GO:0060384_0.670\|GO:0097484_0.670\|GO:1903859_0.670\|GO:1990138_0.670\|GO:0005886_0.650\|GO:0030312_0.573\|GO:0098590_0.563\|GO:0042995_0.561\|GO:0120025_0.559\|GO:0009986_0.556\|GO:0043005_0.554\|GO:0031012_0.551\|GO:0036477_0.551\|GO:0044297_0.551\|GO:0062023_0.549\|GO:0030425_0.548\|GO:0043025_0.548\|GO:0097447_0.548\|GO:0005604_0.540\|GO:0043204_0.540\|GO:0071683_0.540	IPR008663+14-160+\|IPR011055+11-160_163-322+	—	—	—	PTHR11329+14-160+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-348	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.797	38571.270	6.641	1.000	26.437	11.494	46.552	53.448	14.080	12.356	52.586

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	1613.853	2027.975	1218.825	1218.846	1597.851	1805.338	3157.469	1293.869	108.275	2359.336	1394.595

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.964	-0.872	—	0.359	0.191	0.817	-0.588	1.431	-4.562	—	—	—	—

No JSON data available for plots.

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